DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42726 and Zscan21

DIOPT Version :10

Sequence 1:NP_732017.3 Gene:CG42726 / 318709 FlyBaseID:FBgn0261679 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001012021.1 Gene:Zscan21 / 304342 RGDID:1309981 Length:554 Species:Rattus norvegicus


Alignment Length:279 Identity:74/279 - (26%)
Similarity:117/279 - (41%) Gaps:42/279 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 SVDIQETQETQARTSADKRIIVTDKGYHCTVCNKDFRSRTQQYYHLTCGNDL------------- 97
            |.|.|.:.|.::.....||.|:.     ....|| :.||:::.:    .|:|             
  Rat   284 SADEQRSSEEESHAGGLKRNIMP-----MITANK-YGSRSERQW----ANNLERERGAKASLQDT 338

  Fly    98 ----------------LKKFNCKECGRRFATSSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQR 146
                            .|::.|.|||:.|:.||:|..|..:|..:..:.|:.|.|:|.....|..
  Rat   339 GSRKGAEPASARPAPGEKRYICAECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHSSNLTL 403

  Fly   147 HMLTHNQEKHLCPICQKVFRRKSSLASHLAIHSDLGLQFKCELCSKHFQNKANLNQHLRKHDKNN 211
            |..||..::.....|.|.|.:.|.|..|..:|:: ...::|:.|.|.|..|.:|.:|.|.|....
  Rat   404 HYRTHLVDRPYDCKCGKAFGQSSDLLKHQRMHTE-EAPYQCKDCGKAFSGKGSLIRHYRIHTGEK 467

  Fly   212 IRHMCKVCQKSFLRQTTLRLHMKRHSNRERQSCSLCGKSYNDPDALGRHLRQHKTAERYRCIQCD 276
             .:.|..|.|||.:...|..|.:.|:..:...|..|||::|......:|.|.|...:.|.|..|.
  Rat   468 -PYQCNECGKSFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTGEKPYWCNHCG 531

  Fly   277 ITINRKDNMLRHLRSMHPG 295
            .|...|.|:.:|.| :|.|
  Rat   532 KTFCSKSNLSKHQR-VHTG 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42726NP_732017.3 C2H2 Zn finger 74..94 CDD:275368 4/19 (21%)
C2H2 Zn finger 103..123 CDD:275368 9/19 (47%)
COG5048 <112..288 CDD:227381 51/175 (29%)
C2H2 Zn finger 131..151 CDD:275368 6/19 (32%)
C2H2 Zn finger 158..178 CDD:275368 6/19 (32%)
C2H2 Zn finger 187..207 CDD:275368 8/19 (42%)
C2H2 Zn finger 216..236 CDD:275368 7/19 (37%)
C2H2 Zn finger 244..264 CDD:275368 7/19 (37%)
C2H2 Zn finger 272..290 CDD:275368 6/17 (35%)
Zscan21NP_001012021.1 SCAN 119..229 CDD:128708
COG5048 <338..534 CDD:227381 54/197 (27%)
C2H2 Zn finger 360..380 CDD:275368 9/19 (47%)
C2H2 Zn finger 388..408 CDD:275368 6/19 (32%)
C2H2 Zn finger 418..435 CDD:275368 6/16 (38%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
C2H2 Zn finger 471..491 CDD:275368 7/19 (37%)
C2H2 Zn finger 499..519 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368 7/20 (35%)
zf-C2H2 527..547 CDD:395048 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.

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