DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and GLR1.3

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_199652.1 Gene:GLR1.3 / 834896 AraportID:AT5G48410 Length:860 Species:Arabidopsis thaliana


Alignment Length:879 Identity:171/879 - (19%)
Similarity:303/879 - (34%) Gaps:282/879 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLLALRFAGSEVLKITFWIEPVQRAEFD-TDIAMVLKELD----------------ALRLDVKVD 55
            |:.|...:.||...||.:|.     .|| ..:|:|.::.|                .:|:..||.
plant   150 LIQATHDSTSEAKGITSFIN-----VFDWNSVALVYEDHDDWRESMQLLVEHFHENGVRVQSKVG 209

  Fly    56 DTTLTLTRSEDGL--DMQRFCEILSTVGASAVIDLTYSHWEEGYNLVRSLGI---GYVRL--ERI 113
               .|::.|||.:  .:|:..::.:||....:.::..:|.   :...|.||:   |:|.:  .:.
plant   210 ---FTVSSSEDFVMGRLQQLKDLGTTVFVVHLSEVIATHL---FPCARRLGLMGDGFVWILTAKT 268

  Fly   114 MRPFLDMFGDFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFRTLIMDASQTDPGQHFLERIRS 178
            |..|.:...||.:|               |:|.    :||  |::.|..:.:.   |:|..|.|.
plant   269 MNSFHENIDDFTKQ---------------AMEG----VVG--FKSYIPMSIEL---QNFTLRWRK 309

  Fly   179 LRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLE--WHFVFLDTRDRVFKYRRQAELC------ 235
            ..|                    |::|:|.:..:.  |      ..|..|...|.||:.      
plant   310 SLP--------------------VEEAELTRLSISGIW------AHDIAFALARAAEVIRMPNVT 348

  Fly   236 ---------TRFT-------LNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGY 284
                     |||.       ||.:.:..:  ..::....|.:.:|...||...|..|...:|   
plant   349 STLLEEITKTRFNGLSGDFQLNDKKLLSN--KFEIINMIGSSERRVGFLNSNGSFSNRRHLS--- 408

  Fly   285 PLAIYQDCNATASSSEVSDPLEKDDYNWLDMVHWSNFLAYAPPLPHIQDQFQSPVPGLTFAVNIS 349
                                   ..:|.|:.:.|....|.:|....:.|                
plant   409 -----------------------STHNKLETIIWPGGSAQSPKGTSLID---------------- 434

  Fly   350 AGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREEGTGELIRDRSG 414
                             |...::|:|   ::.:.||.|:...|:.|        .|.||      
plant   435 -----------------SDRKKLRVL---VTSSNRFPRLMKVETDP--------VTNEL------ 465

  Fly   415 LPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELN-------ELGEWDGVVGDLVRGETDFAI 472
              |.||:||:.........|:|.|.: |.:......|       :..::|..|||:.        
plant   466 --IVEGFCIEVFRASISPFNYEVEYI-PWLNGSNYDNLAYALHSQKDKYDAAVGDIT-------- 519

  Fly   473 AALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIW 537
                :.|.|...:||..|:.|. |:.|.   .|:..|::.|...|..::|::.....|.|.:::|
plant   520 ----ITSNRSTYVDFTLPFTEM-GLGIV---AVKERSMWVFFQPLTPDLWITSAFFFVLTGVIVW 576

  Fly   538 FMDKYSPYSSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLM 602
            .:::   ..::..:.::|.     .:....||..::.. ....|..|....|.:|.. |:|.||:
plant   577 LIER---AENKEFQGSWPQ-----QIGVVLWFGFSTLV-YAHREKLKHNLSRFVVTV-WVFAVLI 631

  Fly   603 L-ATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTH---QYFVNMKFAEDTLYRMW 663
            | |::||.|.:.:||:                :|.:...:|...|   ....|:.....:| |..
plant   632 LTASYTATLTSMMTVQ----------------QIRFNSNEDYVGHLSGSLIANVALTSSSL-RAM 679

  Fly   664 KELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEI 728
            :.|.||::.|              |...||  |.:......:..:..|...||..:.|:     :
plant   680 RSLGLNSAAD--------------YAQALL--NKTVSFVVDELPYLKVVLGENPTHFFM-----V 723

  Fly   729 KYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNC 793
            |.:.|.|             .:....|:|..|...:|..|.:|:......|:: |.|..:.|| .
plant   724 KTQSTTN-------------GFGFMFQKGFELVPNVSREISKLRTSEKLNEME-KRWFDNQLP-Y 773

  Fly   794 PLSEDQEGITLESLGGVF--IATLFGLVLAMMTL 825
            ...:....|||....|:|  |...|...||::.:
plant   774 TTDDTSNPITLYRFRGLFIIIGVSFAFALAVLVI 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 85/413 (21%)
Lig_chan 520..818 CDD:278489 61/303 (20%)
GLR1.3NP_199652.1 PBP1_GABAb_receptor 43..405 CDD:107361 64/317 (20%)
ANF_receptor 57..385 CDD:279440 58/297 (20%)
GluR_Plant 438..767 CDD:270404 87/426 (20%)
Lig_chan 559..798 CDD:278489 60/301 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.910

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