DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and GLR2.6

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001330285.1 Gene:GLR2.6 / 830988 AraportID:AT5G11180 Length:967 Species:Arabidopsis thaliana


Alignment Length:895 Identity:194/895 - (21%)
Similarity:329/895 - (36%) Gaps:249/895 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 VEAMQQMLVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIA---------LFARAAAM---- 195
            |:|.|::.|...:|:.|...|..|..:..|.::.:: |...:|.         ||:.|..:    
plant   189 VDAFQEINVRIRYRSAISVHSTDDLVKKELYKLMTM-PTRVFIVHMLPDLGSRLFSIAKEIGMMT 252

  Fly   196 --------NGIFEKVQ---KADL------------FQRPLEWHFVFLDTRDRVFKYRRQAELCTR 237
                    |||.:::.   ::.|            |.|..|  .::|:||   ::.|...|....
plant   253 KGYVWIVTNGIADQMSVMGESSLENMHGVLGVKTYFSRSKE--LMYLETR---WRKRFGGEELNN 312

  Fly   238 FTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGYPLAIYQDCNATASSSEVS 302
            |.                |. |:....|:.:::       .::|          .|...|.|:..
plant   313 FE----------------CW-GYDTATALAMSI-------EEIS----------SNVNMSFSQTK 343

  Fly   303 DPLEKDDYNW-LDMVHWSNFLAYAPPL---------PHIQDQFQ---SPVPGLTF-AVNISAGYY 353
            ....:||... ||.:   :|....|.|         ..:..:||   ..:...|| .|||     
plant   344 RNTSRDDTGTDLDDL---SFALSGPKLLQALATVSFKGVAGRFQLKNGKLEATTFKIVNI----- 400

  Fly   354 SSEHEAKTDLAAW-SSVGEMRLL--NET---ISPARRFFR----IGTAESIP--WSY------LR 400
              |...:..:..| |.||.::.|  |:|   ||.:....|    .|....:|  |.:      ||
plant   401 --EESGERTVGFWKSKVGLVKSLRVNQTGIKISHSSHRLRPIIWPGDTIFVPKGWEFPTNAKKLR 463

  Fly   401 ----REEGTG---ELIRD-RSGLPIWEGYCIDFIIRLSQKLNF--EFEIV---APEVGHMGELNE 452
                :::|..   |:.:| .:..|...|:|||......:::.:  .:|.:   .|:....|..:|
plant   464 IAVPKKDGFNNFVEVTKDANTNAPTITGFCIDVFDTAMRQMPYAVPYEYIPFETPDGKPRGSYDE 528

  Fly   453 ------LGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIR-KPVRRTSL 510
                  |||:||.|||..            :.:.|...:||..||.| |||.:.:. |..|....
plant   529 MVYHVFLGEFDGAVGDTT------------ILANRSTYVDFALPYSE-TGIVVVVPVKDEREKGK 580

  Fly   511 FKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRN----NRQAYPYACREFTLRESFWFAL 571
            :.|:..|..|:|....|:.:...||:|..:..:....|.    |:           :...|:|:.
plant   581 WVFLKPLTRELWFLTAASFLYIGIMVWIFEYQASGDFRKQSIINK-----------ISNVFYFSF 634

  Fly   572 TS--FTPQGGGEAPKAISGRMLVAAYWLFVVLMLA-TFTANLAAFLTVERMQTPVQSLEQLARQS 633
            ::  |......|   :|..|:||.. |.||:|:|. ::||.|.:.|||:.::..|:.::.| |.|
plant   635 STLFFAHMRPSE---SIFTRVLVVV-WCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDL-RNS 694

  Fly   634 RINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSS 698
            .:|......|.|.:....|.:.|..|                  :.:|.|   |..|.|....||
plant   695 GVNIGYQTGSFTFERLKQMGYKESRL------------------KTYDTP---QEMHELFLKKSS 738

  Fly   699 QPVADAKEGFANVDAHENADYAFIHDSAEIKYEITRNCN-LTEVGEVFAEQPYAVAVQQGSHLGD 762
            ....||               || .:.|.:|..:.:.|: .|.:...|....:..|...||.|..
plant   739 NGGIDA---------------AF-DEVAYVKLFMAKYCSKYTIIEPTFKADGFGFAFPLGSPLVP 787

  Fly   763 ELSYAILELQKDRFFEELKA---------KYWNQSNLPNCPLSEDQEGITLESLGGVFIATLFGL 818
            :||..||.:.:.   |.:||         |:...|...:.|:..|..  :.|:|..:.......|
plant   788 DLSRQILNITEG---ETMKAIENKWLLGEKHCLDSTTSDSPIRLDHH--SFEALFTIVFVVSMLL 847

  Fly   819 VLAMMTLGMEVLYYKKKQNALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKP 883
            :|||:....    |:::..:.||..     ::|.:.||....|...|....:|...|.::.:   
plant   848 LLAMLVCRR----YRQESKSGEINA-----NNSPTDGNMRAPPNQPTDDNMRAPTSPPIDDQ--- 900

  Fly   884 AKVSPP-PSFETATFRGKKLPARITLGDG-------KFKPRHGLYARRNL 925
             .:.|| |:...|..:.:.|...:.:||.       :..|.  |..||||
plant   901 -VLEPPGPALNEADDQDQLLNDEVNVGDRNEVDIIVEVDPT--LVHRRNL 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 104/451 (23%)
Lig_chan 520..818 CDD:278489 70/314 (22%)
GLR2.6NP_001330285.1 PBP1_GABAb_receptor_plant 38..421 CDD:380645 53/281 (19%)
GluR_Plant 460..810 CDD:270404 99/418 (24%)
Lig_chan 590..842 CDD:365843 70/309 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.910

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