DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and GLR2.4

DIOPT Version :10

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001328410.1 Gene:GLR2.4 / 829299 AraportID:AT4G31710 Length:912 Species:Arabidopsis thaliana


Alignment Length:922 Identity:169/922 - (18%)
Similarity:324/922 - (35%) Gaps:268/922 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 TDIAMVLKELDALRLDVKVDD---------TTLTLTRSED----------GLDMQRFCEILSTVG 81
            ||:......|..|.:::.:.|         |.|.|..::.          .||:.:..|:.:.:|
plant    61 TDVGTTASNLSLLAINMSLSDFYSSRPESRTRLLLNFADSRDDVVGAAAAALDLIKNKEVKAILG 125

  Fly    82 ------ASAVID---------LTYSHWEEGYNLVRSLGIGYVRLERIMRPFLD----------MF 121
                  ||.||:         :::|                     ...||||          .:
plant   126 PRTTMQASFVIEVGQKSQVPIISFS---------------------ATSPFLDSGRSPYFFRSTY 169

  Fly   122 GDFMRQKRANNVAMVFMNARDAV-----------------EAMQQMLVGYPFRTLIMDASQTDPG 169
            .|..:.:..:.:..|| ..|:.|                 :|:|.:.:..|:||:|...:..|..
plant   170 DDSSQVQAISEIIKVF-GWREVVPVYENNAFGEGIMPGLTDALQAINIRIPYRTVISPNATDDEI 233

  Fly   170 QHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEW--------HFVFLDTRDRVF 226
            ...|.::.: :|...::....|..| :.:|.|.::..|.::...|        |.|.::..| :.
plant   234 SVDLLKLMT-KPTRVFVVHMNRFLA-SRVFSKARETGLMKQGYAWILTNGVIDHLVLMNGTD-IE 295

  Fly   227 KYRRQAELCTRFTLNPR------AICRSMPMPDL-------YCGS---GFTMQRAMLLNVLRSLI 275
            ..:....:.|.|.::..      .:.::.|:.:|       |..:   ...::.|...|:..|.:
plant   296 AMQGVIGIRTHFPISEELQTFRSRLAKAFPVSELNIYGLRAYDATTALAMAVEEAGTTNLTFSKM 360

  Fly   276 NAAQVSPGYPLAIYQ-DCNATASSSEVSDPLEKDDYNWLD-MVHWSNFLAYAPPLPHIQDQFQSP 338
            :...:|....|::.: ......|.|::.......||:::| .:|.|.|            :..:.
plant   361 DGRNISDLEALSVSEYGPKLIRSLSQIQFKGLSGDYHFVDGQLHASVF------------EIVNV 413

  Fly   339 VPGLTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRL-------LNETISPARRFFRIGTAESIPW 396
            :.|    ..|..|:::.:.....||:  .|.|..|.       ||..:.|       |...::|.
plant   414 IDG----GGILVGFWTQDKGLVKDLS--PSSGTTRTFSSWKNHLNPILWP-------GITLTVPK 465

  Fly   397 SYLRREEGTGELIRDRSGLP-------------------IWEGYCIDFIIRLSQKLNFEFEIVAP 442
            .:.....|. ||   :.|:|                   |..|:||||...:.|.:.:       
plant   466 GWEIPTNGK-EL---QIGVPVGTFPQFVKVTTDPLTHETIVTGFCIDFFEAVIQAMPY------- 519

  Fly   443 EVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQ-TGISIAIRKPVR 506
            :|.|  .....|:.||...|..            :.:.|...:||..||... .|:.:.::..|.
plant   520 DVSH--RFIPFGDDDGKTNDTT------------ILANRSSYVDFTLPYTTSGVGMVVPLKDNVA 570

  Fly   507 RTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYACREFT------LRE 565
            |:||. |...|...:|...:.:......::|.::      .|.|        .|||      :..
plant   571 RSSLI-FFKPLTPGLWGMTLGSFFVVGFVVWILE------HRVN--------SEFTGPPQYQIST 620

  Fly   566 SFWFA--LTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLA-TFTANLAAFLTVERMQTPVQSLE 627
            .||||  :..|.|:   |...:.:.|::|.. |.|:||:|. ::||:|::.||.:::.....|::
plant   621 MFWFAFSIMVFAPR---ERVMSFTARVVVIT-WYFIVLVLTQSYTASLSSLLTTQQLNPTETSIK 681

  Fly   628 Q-LARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHI 691
            . ||:...:.|.  :||     ||..|..|               ..|.:.|:..:...|:...:
plant   682 NVLAKGGPVAYQ--RDS-----FVLGKLRE---------------SGFPESRLVPFTSPEKCEEL 724

  Fly   692 LLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITRNCNLTEVGEV-FAEQPYAVAVQ 755
            |   |...........|..|              ..::..:.:.|...::.|| |....:.....
plant   725 L---NKGPSKGGVSAAFMEV--------------PYVRVFLGQYCKKYKMVEVPFDVDGFGFVFP 772

  Fly   756 QGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSEDQ---------EGITLESLGGVF 811
            .||.|..::|.|||::.:.....:|:.. |.::....||...:.         ..::|:|...:|
plant   773 IGSPLVADVSRAILKVAESNKATQLETA-WFKNIDKTCPDPMNNPDPNPTVSFRKLSLDSFLLLF 836

  Fly   812 IATLFGLVLAMM 823
            :|......||::
plant   837 VAAATVCTLALL 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 87/433 (20%)
GLR2.4NP_001328410.1 PBP1_GABAb_receptor_plant 56..434 CDD:380645 65/413 (16%)
GluR_Plant 474..802 CDD:270404 84/411 (20%)
Periplasmic_Binding_Protein_Type_2 482..>696 CDD:473866 55/255 (22%)

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