DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and GLR3.6

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:914 Identity:193/914 - (21%)
Similarity:332/914 - (36%) Gaps:270/914 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LRFAGSEVLKITFWIEPVQRAEFDTDIAMVLKELDALRLDVKVDDTTLT--------LTRSEDGL 68
            |:|..||.:.|   |.| ||:.....:|.|..||....|.....|.|::        .|...|..
plant    88 LQFMESETVAI---IGP-QRSTTARVVAHVATELKIPILSFSATDPTMSPLQFPFFIRTSQNDLF 148

  Fly    69 DMQRFCEILSTVGASAVIDLTYSHWEEGYNLVRSLG---------IGYVRLERIMRPFLDMFGDF 124
            .|....:|:...|...|:.: |...:.|.|.|.:||         |.| :......|..:...|.
plant   149 QMAAIADIVQFYGWREVVAI-YGDDDYGRNGVAALGDRLSEKRCRISY-KAALPPAPTRENITDL 211

  Fly   125 MRQKRANNVAMVFMNAR--------DAVEAMQQMLVGY-----PFRTLIMDASQTDP-------- 168
            :.:...:...::.::|.        :....:..|..||     .:.:.|:|.....|        
plant   212 LIKVALSESRIIVVHASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLPLDTINNIQ 276

  Fly   169 --------------GQHFLERIRSLRPA--PTYIALFA------RAAAMNGIFEKVQKADLFQRP 211
                          .|:|::|..:|...  .|| ||:|      .|.|::..|:|.......:.|
plant   277 GVITLRLHTPNSIMKQNFVQRWHNLTHVGLSTY-ALYAYDTVWLLAQAIDDFFKKGGNVSFSKNP 340

  Fly   212 L-------EWHF----------VFLDT---RDRVFKYRRQAELCTRFTLNPRAICRSMPMPDLYC 256
            :       ..|.          :||::   .||:....|......|..:||              
plant   341 IISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKFTSDRNLVNP-------------- 391

  Fly   257 GSGFTMQRAMLLNVLRSLINAAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDYNW--LDMVHWS 319
              .|.     :|||         :..||....|. .|.:..|...:|.:|...::.  |..|.| 
plant   392 --AFD-----VLNV---------IGTGYTTIGYW-FNHSGLSVMPADEMENTSFSGQKLHSVVW- 438

  Fly   320 NFLAYAPPLPHIQDQFQSPVPGLTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARR 384
                                ||  .::.|..|:..|.:                         .|
plant   439 --------------------PG--HSIKIPRGWVFSNN-------------------------GR 456

  Fly   385 FFRIGTAESIPWSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNF--EFEIVAPEVGHM 447
            ..|||    :|..|  |.|   |::..:|...| .|:|:|..|.....|.:  .||:||...||.
plant   457 HLRIG----VPNRY--RFE---EVVSVKSNGMI-TGFCVDVFIAAINLLPYAVPFELVAFGNGHD 511

  Fly   448 GELN-EL------GEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPV 505
            ...| ||      |.:|..|||:.            :.:||.::.||..||.|...:.:|   ||
plant   512 NPSNSELVRLITTGVYDAGVGDIT------------IITERTKMADFTQPYVESGLVVVA---PV 561

  Fly   506 RR--TSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYACREFTLRESFW 568
            |:  :|...|:.....::||...|:.:....:||.::     ...|:....|...:..|   :||
plant   562 RKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCLE-----HKHNDEFRGPPRRQVIT---TFW 618

  Fly   569 FALTS--FTPQGGGEAPKAISGRMLVAAYWLFVVLML-ATFTANLAAFLTVERMQTPVQSLEQL- 629
            |:.::  |:.:   |...:..|| :|...||||||:: :::||:|.:.|||.::.:|::.:|.| 
plant   619 FSFSTLFFSHR---ETTTSNLGR-IVLIIWLFVVLIINSSYTASLTSILTVHQLSSPIKGIETLQ 679

  Fly   630 ARQSRINY---TVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHI 691
            .....|.|   :.|:|...|:..:::.          :.:.|.:.:::.| .:.|.|        
plant   680 TNHDPIGYPQGSFVRDYLIHELNIHVS----------RLVPLRSPEEYDK-ALRDGP-------- 725

  Fly   692 LLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQ 756
                        .|.|.|          |.:.:.|.|:..::..|....||:.|.:..:..|..:
plant   726 ------------GKGGVA----------AVVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPR 768

  Fly   757 GSHLGDELSYAILELQKDRFFEELKAKYW---NQSNLPNCPLSEDQEGITLESLGGVFIATLFGL 818
            .|.|..::|.|||:|.::...:.::.| |   ...:|....:..|:  :.|:|..|:|:......
plant   769 NSPLAVDVSAAILQLSENGDMQRIRDK-WLLRKACSLQGAEIEVDR--LELKSFWGLFVVCGVAC 830

  Fly   819 VLAM 822
            |||:
plant   831 VLAL 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 103/423 (24%)
Lig_chan 520..818 CDD:278489 66/307 (21%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.910

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