DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and GLR2.3

DIOPT Version :10

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001325281.1 Gene:GLR2.3 / 817007 AraportID:AT2G24710 Length:919 Species:Arabidopsis thaliana


Alignment Length:196 Identity:46/196 - (23%)
Similarity:76/196 - (38%) Gaps:41/196 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 RLEETKQQILKAGVPAEKINA--VVADVTEASGQDDII-----NTT--LAKFGKIDILVNNAGAN 97
            :|||..:         ||.||  :..|:.|...|:...     |.|  |....:.|.|..::..|
plant   130 KLEERDK---------EKKNARGIRDDIEEEDDQEAYFRYMAENPTAGLVPEEEEDNLEYDSDGN 185

  Fly    98 -LADGTANTDQPV------ELYQKTFKLNF-QAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ-- 152
             :|..|.....|:      |:....|:.|| :...|:|.:|.:.:.:.:.::....|..|.|:  
plant   186 PIAPTTKRIIDPLPPIDHTEIEYTPFEKNFYEEHEEITSQTPQQITELRHKLNLRVSGAAPPRLC 250

  Fly   153 ---AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSF 214
               ||.|:......:....:||:.|.|..  .||        .||......:|:.:|.|.|..:|
plant   251 SSFAHFGFDEQLMHQIRKSEYTQPTPIQC--QGV--------PVALSGRDMIGIAKTGSGKTAAF 305

  Fly   215 I 215
            |
plant   306 I 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435
GLR2.3NP_001325281.1 PBP1_GABAb_receptor_plant 69..436 CDD:380645 46/196 (23%)
GluR_Plant 476..825 CDD:270404
Lig_chan 604..865 CDD:459656
Blue background indicates that the domain is not in the aligned region.

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