DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and grik5-like.1

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5-like.1 / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:439 Identity:133/439 - (30%)
Similarity:216/439 - (49%) Gaps:57/439 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   409 IRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIA 473
            ::..||:   ||:|||.:..|:|.|.|.:.|...:.|..|..::.|.|:|:||:::|.|.|.|:|
 Frog    55 MKTESGM---EGFCIDLLSELAQSLGFNYTIKEVKDGRYGAKDQDGNWNGMVGEVLRKEADLAVA 116

  Fly   474 ALKMYSEREEVIDFLPPYYEQTGISIAIRK-PVRRTS-LFKFMTVLRLEVWLSIVAALVGTAIMI 536
            .|.:...||..:.|..|:. ||||||.:|| .|...| ||.|:|....|.|:.|:.|.|.|::.:
 Frog   117 PLTITGARERELAFTKPFM-QTGISILLRKDDVSENSYLFGFLTPFSKETWIGILVAYVVTSLCL 180

  Fly   537 WFMDKYSP------YSSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAISGRMLVAAY 595
            :.:.:.||      .:.:||          |....|.||.:.:||.||....||::|.|::...:
 Frog   181 FLVGRLSPCEWTELSTEQNN----------FNFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIW 235

  Fly   596 WLFVVLMLATFTANLAAFLTVERMQTP-VQSLEQLARQSRINYTVVKDSDTHQYFVNMKFAEDTL 659
            |:|.::::|.:.|:.||||..:.|||. :|:.|.|..|..:.:..:..|.|.|:|.|.|   :..
 Frog   236 WIFSIVLVAAYIASFAAFLNSDSMQTTNIQTFEDLVNQRTLEFGTINSSSTFQFFKNSK---NPT 297

  Fly   660 YRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHD 724
            |||                |::|..|.:  ..||..:.::.|...||          ::|||:.:
 Frog   298 YRM----------------IYEYMDKRK--DELLVKSFAEGVRRVKE----------SNYAFLGE 334

  Fly   725 SAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSN 789
            |......:.::|:|....::.|.:.|.:|....|.|...||.||||..:....|.|:.|:|:  |
 Frog   335 SVMQDIMVAKHCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKWWD--N 397

  Fly   790 LPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQNA 838
            ..|...|.....:...:|||:|:....||.|.::...:| |..|.:.||
 Frog   398 TCNMKRSAGWNPVQPHTLGGIFLILGIGLALGVIAALVE-LVLKARNNA 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 117/385 (30%)
Lig_chan 520..818 CDD:278489 82/304 (27%)
grik5-like.1NP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 117/385 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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