DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and grin1a

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_005161118.1 Gene:grin1a / 767745 ZFINID:ZDB-GENE-051202-1 Length:951 Species:Danio rerio


Alignment Length:1002 Identity:221/1002 - (22%)
Similarity:392/1002 - (39%) Gaps:254/1002 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 ELDALRLDVKVDDTTLTLTRSEDGLDMQRFCEILS----------------TVG--ASAVIDLT- 89
            :|.|:.:..|.:...:.|:..||.:..|.:..::|                |.|  ...|:.|| 
Zfish    56 KLTAISVTHKANAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT 120

  Fly    90 ----YSHWEEGYNLVRSLGIGYVRLERIMRPF---LDMFGDFMRQKRANNVAMVFMNARDAVEAM 147
                ||.        :|:.:.::   |.:.|:   ..::.|.||:.|.|::.::..:..:...|.
Zfish   121 RMSIYSD--------KSIHLSFL---RTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQ 174

  Fly   148 QQMLVGYPFRTLIMDASQTDPGQHF-----LERIRSLRPAPTYIALFARAAAMNGIFEKVQKADL 207
            :::      .||:.:....:..:::     |.......|....:..|.:...:..:.       |
Zfish   175 KRL------ETLLEERETKNKKRNYENQDQLSYDNKRGPKAEKVLQFNQETNLTALL-------L 226

  Fly   208 FQRPLEWHFVFLDTRDR----VFKYRRQAELCTRFTLNPRAICRSMPMPDLYCGSGFTM---QRA 265
            ..:.||...:.|...:.    |:|       ..|| ||             ..|||:..   :|.
Zfish   227 EAKELEARVIILSASEEDAAAVYK-------TARF-LN-------------MTGSGYVWLVGERE 270

  Fly   266 MLLNVLR---------SLINAAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDYNW--LDMVHWS 319
            |....|.         .|||....|     |...|..|..:.| :.:..||::...  ...|..:
Zfish   271 MSGKALSEAPDGLIGLQLINGKNES-----AHISDAVAVVAQS-IQELFEKENITEPPRGCVGNT 329

  Fly   320 NFLAYAPPLPHIQDQFQSPVPGLTFAVNIS------AGYYSSEHEAKTDLAAWSSVG-------- 370
            |.....|....:....:.| .|||..|..:      ..:||..:..|:.|.   .||        
Zfish   330 NIWKTGPLFKRVLMSSKYP-EGLTGRVEFNDDGDRKYAHYSILNYQKSRLI---QVGIYNGTQVV 390

  Fly   371 ---EMRLL---NETISPARRFFRIGTAESI------PWSYLR--------REEGT--GELIR--- 410
               :.:::   .||..|  |.|::.|...|      |:.|::        :||.|  |.||:   
Zfish   391 MNKQRKIIWPGGETERP--RGFQMSTRLKIVTIHQEPFVYVKPTTLEGTCKEEYTPNGVLIKKVI 453

  Fly   411 ----------DRSGLPI----WEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELG-----EW 456
                      :.||.||    ..|:|||.:|:|:..:||.:|:.....|..|....:.     ||
Zfish   454 CTGPNETIPGNTSGRPIVPQCCYGFCIDLLIKLALTMNFTYEVHLVADGKFGTQERVNNSNKKEW 518

  Fly   457 DGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEV 521
            :|::|:|:.|..|..:|.|.:.:||.:.|:|..|:..| |::|.::|.:.|::|..||...:..:
Zfish   519 NGMMGELLGGLADMIVAPLTINNERAQYIEFSKPFKYQ-GLTILVKKEIPRSTLDSFMQPFQSTL 582

  Fly   522 WLSIVAALVGTAIMIWFMDKYSPY------SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGG 580
            ||.:..::...|:|::.:|::||:      |......|       .||..:.||:.......|.|
Zfish   583 WLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDA-------LTLSSAMWFSWGVLLNSGIG 640

  Fly   581 E-APKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE--QLARQS-RINYTVVK 641
            | ||::.|.|:|...:..|.::::|::||||||||.::|.:..:..:.  :|...| :..|..||
Zfish   641 EGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVK 705

  Fly   642 DSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKE 706
            .|....|| ..:....|:||..:                    |..|.....||   |.|.|   
Zfish   706 QSSVDIYF-RRQVELSTMYRHME--------------------KHNYESAAEAI---QAVRD--- 743

  Fly   707 GFANVDAHENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILEL 771
                     |..:|||.|||.:::|.::.|:|...||:|....:.:.:::.|.....:|.|||..
Zfish   744 ---------NKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLAILSS 799

  Fly   772 QKDRFFEELKAKYW-------NQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEV 829
            .::.|.|:|. |.|       ::||.|        ..:|.|::.|||:....|:...:..:.:|:
Zfish   800 HENGFMEDLD-KTWVRYQECDSRSNAP--------ATLTFENMAGVFMLVAGGIAAGIFLIFIEI 855

  Fly   830 LY-----YKKKQNALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKPAKVSPP 889
            .|     .::||..|....|.....      |...:....|...:::.     .|:..|.|   .
Zfish   856 AYKRHKDARRKQMQLAFAAVNVWRK------NLQPSSSVETQDDRKSG-----RADSDPKK---K 906

  Fly   890 PSFET-ATFRGKKLPARITLGDGKFKP 915
            |||.: :|.....:..|.:..|.::.|
Zfish   907 PSFRSISTTLASSIKRRRSSKDTQYPP 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 122/457 (27%)
Lig_chan 520..818 CDD:278489 81/314 (26%)
grin1aXP_005161118.1 PBP1_iGluR_NMDA_NR1 5..401 CDD:107374 69/399 (17%)
ANF_receptor 54..372 CDD:279440 65/367 (18%)
PBP2_iGluR_NMDA_Nr1 413..819 CDD:270437 120/450 (27%)
Lig_chan 581..844 CDD:278489 81/314 (26%)
CaM_bdg_C0 855..883 CDD:287524 6/33 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.