DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and grin2bb

DIOPT Version :10

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001121809.1 Gene:grin2bb / 559976 ZFINID:ZDB-GENE-061207-27 Length:1770 Species:Danio rerio


Alignment Length:518 Identity:126/518 - (24%)
Similarity:227/518 - (43%) Gaps:107/518 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   353 YSSEHEAKTDLAAWSSVGEMR-LLNETISPARRFFRIGTA--ESIPW-SYLRREEGTGELIRDRS 413
            ||...|.:.|..:..::.|.. ::.|.:.|..     ||.  .::|. ..|:.:..||:     |
Zfish   474 YSDAEEREDDHLSIVTLEEAPFVIVEDVDPLS-----GTCMRNTVPCRKQLKLQNLTGD-----S 528

  Fly   414 GLPI---WEGYCIDFIIRLSQKLNFEFEIVAPEVG-HMGELNELGEWDGVVGDLVRGETDFAIAA 474
            |:.|   .:|:|||.:.::::.:.|.:::.....| |..::|  |.|:|:||::|......|:.:
Zfish   529 GIYIKRCCKGFCIDILKKIAKSVKFTYDLYLVTNGKHGKKIN--GTWNGMVGEVVLKNAHMAVGS 591

  Fly   475 LKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVW-LSIVAALVGTAIMIWF 538
            |.:..||.|||||..|:.| ||||:.:.:.....|...|:.....:|| :..|..|:.:|:.::.
Zfish   592 LTINEERSEVIDFSVPFIE-TGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFV 655

  Fly   539 MDKYSPYSSRNNRQAYPYAC----RE-----FTLRESFW----FALTSFTPQGGGEAPKAISGRM 590
            .:.:||..  .||      |    ||     ||:.::.|    ....:..|.   :.||..:.::
Zfish   656 FEYFSPVG--YNR------CLADGREPGGPSFTIGKAIWLLWGLVFNNSVPV---QNPKGTTSKI 709

  Fly   591 LVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYT------VVKDSDTHQYF 649
            :|:.:..|.|:.||::|||||||:..|.....|..|.....|...:::      .|.:..|.:  
Zfish   710 MVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVTGLSDKKFQHPNDFSPPFRFGTVPNGSTER-- 772

  Fly   650 VNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAH 714
                               |...::|:...:.....::        |.::.:...|.|  .:|  
Zfish   773 -------------------NIRNNYKEMHSYMTSFHQK--------NVNEALHSLKSG--KLD-- 806

  Fly   715 ENADYAFIHDSAEIKYEITRN--CNLTEVGE--VFAEQPYAVAVQQGSHLGDELSYAILELQKDR 775
                 |||:|:|.:.|...|:  |.|..:|.  :||...|.:|:|:.|.....:..|||:|..|.
Zfish   807 -----AFIYDAAVLNYMAGRDEGCKLVTIGSGYIFATTGYGIAIQKDSGWKRAVDLAILQLFGDG 866

  Fly   776 FFEELKAKYW------NQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYY 832
            ..|||:| .|      |:.|    .:...|  :.::::.|||......:.|:::|...|.|:|
Zfish   867 EMEELEA-LWLTGICHNEKN----EVMSSQ--LDVDNMAGVFYMLGAAMALSLITFIAEHLFY 922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 108/439 (25%)
grin2bbNP_001121809.1 PBP1_iGluR_NMDA_NR2 107..465 CDD:380601
PBP2_iGluR_NMDA_Nr2 482..882 CDD:270436 112/462 (24%)
NMDAR2_C 919..1770 CDD:463148 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.

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