DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and grid1b

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:912 Identity:203/912 - (22%)
Similarity:354/912 - (38%) Gaps:238/912 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 ALRLDVKVDDTTLTLTRSEDGLDMQRFCEILSTVGASAVIDLTYSHWEEGYNLVRSLGIGYVRLE 111
            |.|..|::.|..|||...   |..|:|...                ::..|: :|.|   .|.|:
Zfish   142 AARPPVRLGDVMLTLVGE---LRWQKFIVF----------------YDSDYD-IRGL---QVFLD 183

  Fly   112 RIMRPFLDMFGDFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFRTLIMDASQTDPGQHFLERI 176
            :..|..||:    ..|:...|::.||.:                    :..:.:|:.    |.|.
Zfish   184 QTSRQGLDV----SLQRVDRNISGVFSS--------------------LFTSMRTEE----LNRY 220

  Fly   177 R-SLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWHFVFLDTRDRVFKYRRQAELCTRFTL 240
            | :||.|   |.|.:...|...|.:.|: .:|..:...|.||..:..|...     .|| ...:|
Zfish   221 RDTLRRA---ILLLSPRGAQVFIHQAVE-TNLASKDSHWVFVNEEISDTEI-----LEL-AHSSL 275

  Fly   241 NPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGYPLAIYQDCNATASSSEVSDPL 305
            ....:.|.:          |.:.|...::.:|                    |:...||.:.||.
Zfish   276 GRMTVVRQI----------FPLWRDSSVSCMR--------------------NSHRISSLLCDPQ 310

  Fly   306 EKDDYNWLDMVHWSNFLAYAPPLPHIQDQFQSPVPGLTFAVNISAGYYSSEHEAKTDLAAWSSVG 370
            |    .:|..:..||...|...|                  .::..:|....:.|     |.|:.
Zfish   311 E----GYLQSLEVSNLYLYDSVL------------------MLANAFYRKLEDRK-----WHSMA 348

  Fly   371 EMRLLN-------------ETISPAR-------------------RFFRIGTAES---------- 393
            .:..:.             |||...|                   :|..:||:.|          
Zfish   349 SLNCIRKSTKPWNGGWSMLETIQKGRITGLTGIMDFMENGSNSHVQFEILGTSFSETFGKDIKRL 413

  Fly   394 IPWSYLRREEGTGELIRDRSGL-------------PI-------------WEGYCIDFIIRLSQK 432
            ..|..:....|:.:..|..:|:             |.             ::|:.||.:..|::.
Zfish   414 ATWDSVHGLNGSLKESRIENGMQGVTVKVVTLLEDPFVMVAENILGQPKRYKGFSIDVLEALAKI 478

  Fly   433 LNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGI 497
            |.|:::|........|.....|.|:|::|:|:....|.|::|:.:..|||.|:||...|.:.: :
Zfish   479 LGFKYDIYQVADSKYGSQLSNGSWNGMIGELINKRADLAVSAITITPERENVVDFSKRYMDYS-V 542

  Fly   498 SIAIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYACREFT 562
            .|..|||..:.::|.......|.||..|.||:....::|:.:.:.....|:|...|:..:....:
Zfish   543 GILHRKPEEKINIFSLFAPFDLAVWACIAAAIPVVGVLIFLLTRMQMLRSQNPPGAHHASSMSNS 607

  Fly   563 LRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE 627
            |..:.|....:|..|||.....:::.|:::.::|||.:::.:::||||||||||.||...:::.:
Zfish   608 LHSAIWIVYGAFVQQGGDSVVGSVALRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNTIRTFQ 672

  Fly   628 QLARQSRINYTVVKDSDTHQYF----VNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQY 688
            .||||....|..|:||..:.||    .|....:.|...:|:.::.|..:||              
Zfish   673 DLARQMDFAYGTVRDSAVYDYFKAKGTNPLEQDSTYAELWRTISKNNGQDF-------------- 723

  Fly   689 GHILLAINS-SQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITR--NCNLTEVGEVFAEQPY 750
                 :::| |:.:..||:|          .|||:.|.|.::|....  :|.:|..|...:.:.|
Zfish   724 -----SVSSPSEGIRKAKKG----------PYAFLWDMAVVEYAALTDDDCTITVSGNSMSSKGY 773

  Fly   751 AVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSE------DQEGITLESLGG 809
            .:|:|.||...|.:|..|||||:....:.||.|:|.::.  .|.|:.      |...:.|.|..|
Zfish   774 GIAMQHGSPYRDLISQKILELQEKGDLDVLKQKWWPRTG--RCDLNSHSNAQPDGRSLKLHSFAG 836

  Fly   810 VFIATLFGLVLAMMTLGMEVLYYK---KKQNALEITQVRPVNDSSGSGGNSSTAPPTATST-TKQ 870
            ||.....||:||.:...:|:.:..   :::...|:|:...:...||....:..|  ||:|. :|.
Zfish   837 VFCILAAGLLLACLVAALEMWWNSNRCRQEQPKEVTKDYRLARVSGPLTYNDIA--TASSEGSKD 899

  Fly   871 AW 872
            .|
Zfish   900 IW 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 115/464 (25%)
Lig_chan 520..818 CDD:278489 85/310 (27%)
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387 70/399 (18%)
ANF_receptor 36..400 CDD:279440 66/375 (18%)
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 106/401 (26%)
Lig_chan 565..840 CDD:278489 85/305 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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