DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and grin2da

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_009292354.1 Gene:grin2da / 449864 ZFINID:ZDB-GENE-041008-124 Length:1916 Species:Danio rerio


Alignment Length:874 Identity:202/874 - (23%)
Similarity:342/874 - (39%) Gaps:199/874 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 IDLTYSHWEE----GYNLVRSLGIGYVRLERIMRPFLDMFGDFMRQKRANNVAMVFMNARD--AV 144
            :::.:...||    .:::|.:...||.....::...:|  |.|:..:|.   ::|.:|..|  ..
Zfish   203 LEVIFEVLEEFDWTAFSVVTTRHHGYEDFLAMVEGMID--GSFIGWERK---SVVMLNLTDDPGG 262

  Fly   145 EAMQQMLVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGI-FEKVQKADLF 208
            ...:::|.....:..::..||.:..|.|.....|.:..|::: .||....::|: .|.:.||...
Zfish   263 ARTRRLLKENEAQVRLLYCSQEEAEQIFKAAWASGQATPSHM-WFAVGPGLSGLGLEGLPKALFA 326

  Fly   209 QRPLEWHFVFLDTRDRVFKYRRQAELCTRFTLNPRAICRSMPMPDLYCGS-GFTMQRAMLLNVLR 272
            .||..|       ||.  ..||.|:..:..|....|:.|.      |.|: |.:.....:::.  
Zfish   327 VRPQGW-------RDE--PRRRIAKGVSVLTHGAMALRRE------YGGARGTSFAGNCMMDG-- 374

  Fly   273 SLINAAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDY---------------NWLDMVHWSN-- 320
               |..|..||   .|....|.|.|..:.|  ...|.|               .|.::..|.|  
Zfish   375 ---NQTQRVPG---RIRFFSNITLSGRDYS--FNNDGYLANPLLDVISYTAGRGWEEVGWWENGV 431

  Fly   321 -FLAYAPPLPHIQDQFQSPVPGLTFAVNISAGYYSSEHEAKTDLAAWSSVGE-MRLLNETISPAR 383
             .|.|.|                                       ||..|. ::.|:::     
Zfish   432 LRLRYPP---------------------------------------WSRYGPFLKPLDDS----- 452

  Fly   384 RFFRIGTAESIPWSYLR-REEGTGELIRDR--SGLPI---------------WEGYCIDFIIRLS 430
            :..|:.|.|..|:..:. .:.|||..|||.  ..||:               .:|:|||.:.||:
Zfish   453 QHLRVVTLEERPFVIVEPADPGTGSCIRDSVPCRLPLNNSMVVEGIQSMKHCCKGFCIDVLKRLA 517

  Fly   431 QKLNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQT 495
            :.:.|.:::.....|..|: |..|:|:|:||::|....|.||.:|.:..||.||::|..|:.| |
Zfish   518 KIVGFTYDLYLVTNGRHGK-NIDGQWNGMVGEVVSKRADMAIGSLTINEERSEVVEFSVPFVE-T 580

  Fly   496 GISIAIRKPVRRTSLFKFMTVLRLEVW-LSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYA-C 558
            |||:.:.:.....|...|:......|| :..|..|...|:.::..:.:||.....:.|:...| .
Zfish   581 GISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLSVVAVTVFIFEFFSPVGYNRSLQSGKTAGG 645

  Fly   559 REFTLRESFW--FALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQT 621
            .:||:.:|.|  :||. |......|.|:..:.:::|..:..|.|:.||::|||||||:..|....
Zfish   646 SKFTIGKSIWLLWALV-FNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYID 709

  Fly   622 PVQSLEQLARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKE 686
            .|..|.....|          ..|.|| ..::|.          ...|.|.: :..|. :||...
Zfish   710 TVSGLSDKKFQ----------HPTEQY-PPLRFG----------TVPNGSTE-ENIRS-NYPNMH 751

  Fly   687 QYGHILLAINSSQPVADAKEGF--ANVDAHENADYAFIHDSAEIKYEITRN--CNLTEV--GEVF 745
            ||    :..|:.:.|.||.|..  ..:|       |||:|:|.:.|...::  |.:..:  |:||
Zfish   752 QY----MVRNNQRGVEDAIENLKTGKLD-------AFIYDAAVLNYMARKDEGCKVMTIGSGKVF 805

  Fly   746 AEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSEDQEGITLESLGGV 810
            |...|.||:.:.|.....|..|:|:|..|...:.|: :.|......|..:......:.::::.||
Zfish   806 ATTGYGVALHKNSRWKRPLDLALLQLVGDDEIDMLE-RLWLSGICHNDKIEVMSSKLDIDNMAGV 869

  Fly   811 FIATLFGLVLAMMTLGMEVLYYKKKQNALEITQ--------------VRPVNDSSGSGGNSSTAP 861
            |...|..:.|:::....|.|.|.|.::.|..|:              .....|.:..||:.||.|
Zfish   870 FYMLLVAMGLSLLVFAWEHLVYWKLRHCLGRTRGLDFLLAFSRGMYSCCNFEDETAPGGSQSTLP 934

  Fly   862 PTATSTTKQAWHIPVLEAEEKPAKVSPPP 890
                    |..|:         :.|.|||
Zfish   935 --------QYHHV---------STVPPPP 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 117/430 (27%)
Lig_chan 520..818 CDD:278489 78/307 (25%)
grin2daXP_009292354.1 PBP1_iGluR_NMDA_NR2 42..441 CDD:107373 57/307 (19%)
PBP2_iGluR_NMDA_Nr2 452..851 CDD:270436 118/441 (27%)
HisJ <507..>590 CDD:223904 31/84 (37%)
Lig_chan 605..877 CDD:278489 78/307 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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