DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and grid2

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:781 Identity:193/781 - (24%)
Similarity:319/781 - (40%) Gaps:167/781 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 FLDMFG----DFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFRTLIMDASQTDPGQHFLERIR 177
            |||...    |...||..:|:.|              |:.|. |||:.::.         |.|.|
Zfish   184 FLDQTSQQGMDVSLQKVESNINM--------------MITGM-FRTMRVEE---------LHRYR 224

  Fly   178 -SLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWHFV-----FLDTRDRVFKYRRQAELCT 236
             :||.|    .||...|.......:|.:.:|.....:|..:     .:|.::.|.|      ...
Zfish   225 DTLRRA----VLFMSPATAKAFITEVVETNLVAFDCQWIIINEEISDMDVQELVMK------SIG 279

  Fly   237 RFTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGYPLA---------IYQDC 292
            |.||    :.::.|:|.      .|.||.:..|   ..||.:...|..|.|         ||...
Zfish   280 RLTL----VRQTFPLPQ------NTSQRCVRNN---HRINTSLCDPKDPKAQMLEITNRYIYDTV 331

  Fly   293 NATASSSEVSDPLEKDDYNWLDMVHWSNFLAYAPPLPHIQDQFQS----PVPGLTFAVN------ 347
            ...|::..    .:.:|..|..|...|.....:.|....:...::    .|.|||..:.      
Zfish   332 LLLANTFH----RKLEDRKWHSMASLSCIRKGSKPWQGGKSMLETVKKGGVSGLTSLLEFNDNGS 392

  Fly   348 --------ISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARR-------FFRIGTAESIPWS 397
                    :...|........:.||.|..:   ..||.|::..:.       ..|:.|....|: 
Zfish   393 NPNIHFEILGTNYGEDRGRGVSRLATWDPI---HGLNGTLTDRKLENNMRGVVLRVVTVLEEPF- 453

  Fly   398 YLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEI-VAPEVGHMGELNELGEWDGVVG 461
            .:..|...|:..:       ::|:.||.:..|:..|.|::|| |||:..: |.....|.|:|::|
Zfish   454 VMVSENVLGKPKK-------YQGFSIDVLDALANYLGFKYEIYVAPDHKY-GSQQADGTWNGLIG 510

  Fly   462 DLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIV 526
            :||....|..::||.:..|||.|:||...|.:.: :.:.:||..|...:|..:....|.:|..|.
Zfish   511 ELVFKRADVGLSALTITPERESVVDFTTRYMDYS-VGVLLRKAERTVDMFACLAPFDLSLWACIA 574

  Fly   527 AA--LVGTAIMI--WFMDKYSPYSSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAIS 587
            ..  ||||.:.:  |......|..|.::.          ||..|.||...||..|||......::
Zfish   575 GTVLLVGTLVYLLNWLNPPRLPMGSVSST----------TLYNSMWFVYGSFVQQGGEVPYTTLA 629

  Fly   588 GRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNM 652
            .||::..:|||.:::::::|||||||||:.|::..:|||:.||:|:.:.|..|.||..:.. |..
Zfish   630 TRMMMGVWWLFALIVISSYTANLAAFLTISRIENSIQSLQDLAKQTDLPYGTVLDSAVYDQ-VRS 693

  Fly   653 K----FAEDTLY-RMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVD 712
            |    |..|.:| :||:.:....                         .:...|.::|||...| 
Zfish   694 KGMNPFERDPMYSQMWRMINRTG-------------------------GAENNVEESKEGIRKV- 732

  Fly   713 AHENADYAFIHDSAEIKYEI--TRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDR 775
              :...:||:.|:|.::|..  ..:|:|..|....|::.|.:|:|.||...|..|..|||||::.
Zfish   733 --KYGRFAFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILELQQNG 795

  Fly   776 FFEELKAKYWNQSNLPNC----PLSEDQEGITLE--SLGGVFIATLFGLVLAMMTLGMEVLYYKK 834
            ..:.||.|:|.:.:  .|    |:...:.|..|:  |..|||.....|:||:.:...:|..:.::
Zfish   796 DMDILKLKWWPRDS--PCDLYSPVGTRKSGSALDIHSFAGVFFVLAAGVVLSCLIATVETWWTRR 858

  Fly   835 K 835
            |
Zfish   859 K 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 118/421 (28%)
Lig_chan 520..818 CDD:278489 89/314 (28%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 59/296 (20%)
ANF_receptor 42..404 CDD:279440 54/270 (20%)
PBP2_iGluR_delta_2 440..806 CDD:270449 118/414 (29%)
Lig_chan 568..841 CDD:278489 89/313 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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