DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and gria4a

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:569 Identity:156/569 - (27%)
Similarity:270/569 - (47%) Gaps:80/569 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 VNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPA------RRFFRIGTAESIPWSYLRRE-- 402
            ||.:...:..:......:..|:.:.::.|:...:|..      .|...:.|....|:..|::.  
Zfish   365 VNYTMDVFELKSNGPRKIGYWNDLDKLVLVQNELSMGNDSAMENRTVIVTTIMEGPYVMLKKNWE 429

  Fly   403 --EGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELN-ELGEWDGVVGDLV 464
              ||..:          :||||:|....:::.:..:::|.....|..|..: |...|:|:||:||
Zfish   430 MYEGNEQ----------FEGYCVDLASEVAKHIGIKYKISIVLDGKYGARDPETKIWNGMVGELV 484

  Fly   465 RGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVR-RTSLFKFMTVLRLEVWLSIVAA 528
            .|:.:.|:|.|.:...|||||||..|:. ..||||.|:||.: :..:|.|:..|..|:|:.||.|
Zfish   485 YGKAEIAVAPLAITLVREEVIDFSKPFM-SLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFA 548

  Fly   529 LVGTAIMIWFMDKYSPY-------SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAI 586
            .:|.:::::.:.::|||       ...::.........||.:..|.||:|.:|..||....|:::
Zfish   549 YIGVSVVLFLVSRFSPYEWHTEEPEEGSDGPPSDQPPNEFGIFNSLWFSLGAFMQQGCDFTPRSL 613

  Fly   587 SGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVN 651
            |||::...:|.|.:::::::|||||||||||||.:|::|.|.||:|:.|.|..:....|.::|..
Zfish   614 SGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRR 678

  Fly   652 MKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAK---EGFANVDA 713
            .|.|   :|.                ::|.|            :.|::|....|   ||.|.| .
Zfish   679 SKIA---VYE----------------KMWSY------------MKSAEPTVFTKTTAEGVARV-R 711

  Fly   714 HENADYAFIHDSAEIKY-EITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFF 777
            .....|||:.:|...:| |..:.|:..:||.....:.|.||..:||.||..::.|:|:|.:....
Zfish   712 KSKGKYAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSQLGTPVNLAVLKLSEAGVL 776

  Fly   778 EELKAKYWNQSNL--PNCPLSEDQ--EGITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQ-N 837
            ::||.|:|.....  |....|:|:  :.::|.::.|||...:.||.|||:...:|..|..:.: .
Zfish   777 DKLKNKWWYDKGECGPKDSGSKDKSSQALSLSNVAGVFYILVGGLGLAMLVALVEFCYKSRAEAK 841

  Fly   838 ALEIT-------QVR-PVNDSSGSGGNSSTAP-PTATSTTKQAWHIPVL 877
            .|::|       :.| .:..|.|..|...|.. |.|..:.....|.|.|
Zfish   842 KLKLTFSEAMRNKARLSITGSLGENGRVLTPDCPKAVHSGPSYRHGPAL 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 124/419 (30%)
Lig_chan 520..818 CDD:278489 89/312 (29%)
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..393 CDD:107383 3/27 (11%)
ANF_receptor 34..375 CDD:279440 2/9 (22%)
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 125/424 (29%)
Lig_chan 540..821 CDD:278489 89/312 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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