DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and GluRIA

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:510 Identity:152/510 - (29%)
Similarity:249/510 - (48%) Gaps:87/510 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 YLRREEGT-GELI--RDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNEL--GEWD 457
            ||..::.| ||.:  .||     :||||.|....|:.:|..::||...:.|:.|..|:.  |.||
  Fly   490 YLSLKQYTYGESLVGNDR-----FEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPGGWD 549

  Fly   458 GVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRT-SLFKFMTVLRLEV 521
            |:||:|:|.|.|.||:|:.:.:|||.||||..|:. ..||||.|:|||::| .:|.|:..|..|:
  Fly   550 GMVGELIRKEADIAISAMTITAERERVIDFSKPFM-TLGISIMIKKPVKQTPGVFSFLNPLSQEI 613

  Fly   522 WLSIVAALVGTAIMIWFMDKYSPYSSR-----------------------NNRQAY--PYACREF 561
            |:|::.:.||.:.:::|:.::.||..|                       :..||:  |....||
  Fly   614 WISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNEF 678

  Fly   562 TLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSL 626
            |:..|||::|.:|..||....|.:|:||:..|.:|.|.:::::::|||||||||||||..|:::.
  Fly   679 TMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTP 743

  Fly   627 EQLARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHI 691
            |.|..|:.:||..:....|.::|..            .::.|:.       ::|:|         
  Fly   744 EDLTMQTDVNYGTLLYGSTWEFFRR------------SQIGLHN-------KMWEY--------- 780

  Fly   692 LLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITR-NCNLTEVGEVFAEQPYAVAVQ 755
             :..|....|....||...| ......||.:.:|.:.:|...| .|:..:||.....:.:.||..
  Fly   781 -MNANQHHSVHTYDEGIRRV-RQSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATP 843

  Fly   756 QGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSEDQE-----GITLESLGGVFIATL 815
            .||.|...|:.|:|.|:::.....::.|:|....  .|.|  |||     .::|.::.|::...:
  Fly   844 IGSPLRKRLNEAVLTLKENGELLRIRNKWWFDKT--ECNL--DQETSTPNELSLSNVAGIYYILI 904

  Fly   816 FGLVLAMMTLGMEVLYYKKKQNALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQ 870
            .||:||::...||.....|          .|...|.||.|::...|....|:|.|
  Fly   905 GGLLLAVIVAIMEFFCRNK----------TPQLKSPGSNGSAGGVPGMLASSTYQ 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 128/419 (31%)
Lig_chan 520..818 CDD:278489 84/328 (26%)
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375
ANF_receptor 53..434 CDD:279440
PBP2_iGluR_AMPA 477..879 CDD:270433 129/426 (30%)
Lig_chan 612..907 CDD:278489 84/328 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.910

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