DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and Nmdar2

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:962 Identity:213/962 - (22%)
Similarity:346/962 - (35%) Gaps:262/962 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 TTLTL----TRSEDGLDMQRFCEILSTVGASA-----VIDLTYSHWEEG-YNLVRSLGIGYVRLE 111
            |.|||    |||..||.:......||. ||:|     .|.|...|...| ...:||:......|.
  Fly    66 TVLTLLILDTRSCQGLRLTNGGGSLSK-GAAANKEQLNIGLIAPHTNFGKREYLRSINNAVTGLT 129

  Fly   112 RIMRPFLDMFGDFMRQKRANNVAMVFMNARDAVEAMQQML------VGYPFRTLIMDASQ----T 166
            :.....|....|:..:::  |:....|:...:..|:...|      |.......:|:..|    |
  Fly   130 KTRGAKLTFLKDYSFEQK--NIHFDMMSLTPSPTAILSTLCKEFLRVNVSAILYMMNNEQFGHST 192

  Fly   167 DPGQHF--------------------LERIRS-----LRPAPTYIALFARAAAMNGIFEKVQKAD 206
            ...|:|                    |||..|     |:.||   ::..::|||..|.|:     
  Fly   193 ASAQYFLQLAGYLGIPVISWNADNSGLERRASQSTLQLQLAP---SIEHQSAAMLSILER----- 249

  Fly   207 LFQRPLEWHFVFLDT-------------RDRVFKYRRQAELCTRF---TLNPRAICRSMPMPDLY 255
                 .:||...:.|             |:||      ||:...|   .||...:.|:..:.:|.
  Fly   250 -----YKWHQFSVVTSQIAGHDDFVQAVRERV------AEMQEHFKFTILNSIVVTRTSDLMELV 303

  Fly   256 CGSGFTMQRAMLL--------NVLR------------------SLINAAQVSPGYP---LAIYQD 291
            ....    |.|||        .:||                  |:|........:|   |.::.|
  Fly   304 NSEA----RVMLLYATQTEAITILRAAEEMKLTGENYVWVVSQSVIEKKDAHSQFPVGMLGVHFD 364

  Fly   292 CNATASSSEVS---------------DPLEKDDYNWLDMV--------HWSNFLAYAPPLPHIQD 333
            .::.|..:|:|               ||..:|.......:        .|.|...:...|.::..
  Fly   365 TSSAALMNEISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFKYLRNVSI 429

  Fly   334 QFQSPVPGLTFA------------VNI------------SAGYYSSEHEAKTDL--AAW------ 366
            :.....|.:.|.            :|:            ..|.:.|....|.|:  .||      
  Fly   430 EGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQKLDIRDIAWPGNSHA 494

  Fly   367 --SSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREEG----------------TGELIRDRS 413
              ..|.|...|..|......:..:..|:.:....| .:.|                .|:..|:.|
  Fly   495 PPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCL-MDRGVLCRVAADHEMAADIDVGQAHRNES 558

  Fly   414 GLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMY 478
            ......|:|||.:.:.:::|.|.:|:|..|.|..|.| |.|:|:|::.|||..:||..:.:|.:.
  Fly   559 FYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTL-ENGKWNGLIADLVNRKTDMVLTSLMIN 622

  Fly   479 SEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSI-VAALVGTAIMIWFMDKY 542
            :|||.|:||..|:.| |||:|.:.|.....|...|:.......|:.: :.|:.....||:..:..
  Fly   623 TEREAVVDFSEPFME-TGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWL 686

  Fly   543 SP--YSSR---NNRQAYPYACREFTLRESFWFA-LTSFTPQGGGEAPKAISGRMLVAAYWLFVVL 601
            ||  |..:   .|....||   .|:|..::|.. ...|......::|:..:.|.:...:.||.|:
  Fly   687 SPSGYDMKLYLQNTNVTPY---RFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVV 748

  Fly   602 MLATFTANLAAF------------LTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNMKF 654
            .||.:|||||||            |...|:..|. |.:...:...|.|:.. ||..|:||     
  Fly   749 FLAIYTANLAAFMITREEFHEFSGLNDSRLVHPF-SHKPSFKFGTIPYSHT-DSTIHKYF----- 806

  Fly   655 AEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADY 719
                          |...::.:          ||        :...|||   |.|.| .:.|.| 
  Fly   807 --------------NVMHNYMR----------QY--------NKTSVAD---GVAAV-LNGNLD- 834

  Fly   720 AFIHDSAEIKYEITR--NCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKA 782
            :||:|...:.|.:.:  :|.|..||..:|...|.:|..:.|......:..:||.:.:...|.|: 
  Fly   835 SFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLERLR- 898

  Fly   783 KYWNQSNL-PNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYK 833
            :||..... |.....:..:.:.||.....|:..:.|::||.:.|.:|.:|:|
  Fly   899 RYWMTGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHVYFK 950

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 110/439 (25%)
Lig_chan 520..818 CDD:278489 72/319 (23%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 73/415 (18%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 113/456 (25%)
Lig_chan 665..928 CDD:278489 71/310 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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