DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and GRIN2C

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_016880033.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1337 Species:Homo sapiens


Alignment Length:980 Identity:213/980 - (21%)
Similarity:341/980 - (34%) Gaps:293/980 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LRLDVKVDDTTLTLTRSEDGLDMQRFCEILS--------TVGASAVIDLTYSHWEEGYNLVRSLG 104
            |:|.|.::.....|.:..:..|...|..|.|        ..|..||.|.::..|.....:...||
Human   215 LQLGVSLEQQLQVLFKVLEEYDWSAFAVITSLHPGHALFLEGVRAVADASHVSWRLLDVVTLELG 279

  Fly   105 IG--YVRLERIMRPFLD--MFGDFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFRTLIMDASQ 165
            .|  ..|.:|::|. ||  :|..:..::.|.   ::|      .||.|..|||            
Human   280 PGGPRARTQRLLRQ-LDAPVFVAYCSREEAE---VLF------AEAAQAGLVG------------ 322

  Fly   166 TDPGQHFLERIRSL----RPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWHFVFLDTRDRV- 225
              ||..:|....:|    .|..|:..         |:...|.::        |.   |..|.:| 
Human   323 --PGHVWLVPNLALGSTDAPPATFPV---------GLISVVTES--------WR---LSLRQKVR 365

  Fly   226 ----------FKYRRQAELCTRFTL-NPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAA- 278
                      ..|.||     ..|| .|...||..|.|.......|          .|.|:|.. 
Human   366 DGVAILALGAHSYWRQ-----HGTLPAPAGDCRVHPGPVSPAREAF----------YRHLLNVTW 415

  Fly   279 -----QVSPG----YPLAIYQDCNATASSSEVSDPLEKDDYNWLDMV-HWSNFLAYA--PPLPHI 331
                 ..|||    .|..:....|.               :...:|| .|.:.:.|.  |..|..
Human   416 EGRDFSFSPGGYLVQPTMVVIALNR---------------HRLWEMVGRWEHGVLYMKYPVWPRY 465

  Fly   332 QDQFQSPVPG--LTFAVNISAGYYSSEH-EAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAES 393
            ....|..|..  ||.|......:...|. :..|.....::|...|..|.|.|         :.:.
Human   466 SASLQPVVDSRHLTVATLEERPFVIVESPDPGTGGCVPNTVPCRRQSNHTFS---------SGDV 521

  Fly   394 IPWSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELGEWDG 458
            .|::.|                 ..:|:|||.:.:|::.:.|.:::.....|..|: ...|.|:|
Human   522 APYTKL-----------------CCKGFCIDILKKLARVVKFSYDLYLVTNGKHGK-RVRGVWNG 568

  Fly   459 VVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVW- 522
            ::|::.....|.||.:|.:..||.|::||..|:.| ||||:.:.:.....|...|:......|| 
Human   569 MIGEVYYKRADMAIGSLTINEERSEIVDFSVPFVE-TGISVMVARSNGTVSPSAFLEPYSPAVWV 632

  Fly   523 LSIVAALVGTAIMIWFMDKYSPYS-----SRNNRQAYPYACREFTLRESFW--FALTSFTPQGGG 580
            :..|..|...||.::..:.:||.|     :|..:...|    .||:.:|.|  :||. |......
Human   633 MMFVMCLTVVAITVFMFEYFSPVSYNQNLTRGKKSGGP----AFTIGKSVWLLWALV-FNNSVPI 692

  Fly   581 EAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE------------------ 627
            |.|:..:.:::|..:..|.|:.||::|||||||:..|:....|..|.                  
Human   693 ENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKSLHLENTGVAWTAFK 757

  Fly   628 -------------------------QLARQSRINYTVVKDSDTHQYFVNMKFAEDTL--YRMWKE 665
                                     ...|..|.||   :|..||....|.:..||.|  .:|..|
Human   758 TFCSDYFQRPQDQYPPFRFGTVPNGSTERNIRSNY---RDMHTHMVKFNQRSVEDALTSLKMGSE 819

  Fly   666 LALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKY 730
                                            :|||....:             |||:|:|.:.|
Human   820 --------------------------------AQPVPRKLD-------------AFIYDAAVLNY 839

  Fly   731 EITRN--CNLTEV--GEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLP 791
            ...::  |.|..:  |:|||...|.:|:|:.||....:..|:|:...|...::|:. .|......
Human   840 MAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKLET-VWLSGICQ 903

  Fly   792 NCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGME-VLYYKKKQNALEITQV-------RPVN 848
            |.........:.::::.|||...|..:.||::....| ::|:|.:.:....:|:       |.:.
Human   904 NEKNEVMSSKLDIDNMAGVFYMLLVAMGLALLVFAWEHLVYWKLRHSVPNSSQLDFLLAFSRGIY 968

  Fly   849 DSSGSGGNSSTAP-----PTATSTTKQAWHIPVLEAEE---KPAKVS------------------ 887
             |..||..|..:|     |..|:::.||..:.:|:|..   ..|.||                  
Human   969 -SCFSGVQSLASPPRQASPDLTASSAQASVLKMLQAARDMVTTAGVSSSLDRATRTIENWGGGRR 1032

  Fly   888 -PPPS 891
             ||||
Human  1033 APPPS 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 103/459 (22%)
Lig_chan 520..818 CDD:278489 78/354 (22%)
GRIN2CXP_016880033.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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