DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and GRIN1

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_005266130.1 Gene:GRIN1 / 2902 HGNCID:4584 Length:959 Species:Homo sapiens


Alignment Length:912 Identity:196/912 - (21%)
Similarity:339/912 - (37%) Gaps:272/912 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 EFD------TDIAMVLKELDALRLDVKVDDTTLTLTRSEDGLDMQRFCEILSTVGASAVIDLTYS 91
            :||      |.:.|..|||:|         ..:.|:.|||        :..:...|:|::::|  
Human   217 QFDPGTKNVTALLMEAKELEA---------RVIILSASED--------DAATVYRAAAMLNMT-- 262

  Fly    92 HWEEGYNLVRSLGIGYVRL--ERIMRPFLDMFGDFMRQKRANNVAMVFMNAR-------DAVEAM 147
                        |.|||.|  ||      ::.|:.:|......:.:..:|.:       |||..:
Human   263 ------------GSGYVWLVGER------EISGNALRYAPDGILGLQLINGKNESAHISDAVGVV 309

  Fly   148 QQMLVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPL 212
            .|.:     ..|:...:.|||.:..:......:..|.:..:...:...:|:..:|:         
Human   310 AQAV-----HELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVE--------- 360

  Fly   213 EWHFVFLDTRDRVF-KYRRQAELCTRFTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLIN 276
                 |.:..||.| .|                             |...:|...|:.|  .:.|
Human   361 -----FNEDGDRKFANY-----------------------------SIMNLQNRKLVQV--GIYN 389

  Fly   277 AAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDYNWLDMV--HWSNFLAYAPPLPHIQDQFQSPV 339
            ...|.|       .|........|...|........|.:|  |...|:...|.|           
Human   390 GTHVIP-------NDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTL----------- 436

  Fly   340 PGLTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREEG 404
                     |.|....|.....|                  |.::....|..::.|.|       
Human   437 ---------SDGTCKEEFTVNGD------------------PVKKVICTGPNDTSPGS------- 467

  Fly   405 TGELIRDRSGLP-IWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELG-----EWDGVVGDL 463
                  .|..:| ...|:|||.:|:|::.:||.:|:.....|..|....:.     ||:|::|:|
Human   468 ------PRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGEL 526

  Fly   464 VRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIVAA 528
            :.|:.|..:|.|.:.:||.:.|:|..|:..| |::|.::|.:.|::|..||...:..:||.:..:
Human   527 LSGQADMIVAPLTINNERAQYIEFSKPFKYQ-GLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLS 590

  Fly   529 LVGTAIMIWFMDKYSPY------SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGE-APKAI 586
            :...|:|::.:|::||:      |......|       .||..:.||:.......|.|| ||::.
Human   591 VHVVAVMLYLLDRFSPFGRFKVNSEEEEEDA-------LTLSSAMWFSWGVLLNSGIGEGAPRSF 648

  Fly   587 SGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE--QLARQS-RINYTVVKDSDTHQY 648
            |.|:|...:..|.::::|::||||||||.::|.:..:..:.  :|...| :..|..||.|....|
Human   649 SARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIY 713

  Fly   649 FVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDA 713
            | ..:....|:||..:                    |..|.....||   |.|.|          
Human   714 F-RRQVELSTMYRHME--------------------KHNYESAAEAI---QAVRD---------- 744

  Fly   714 HENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFE 778
              |..:|||.|||.:::|.::.|:|...||:|....:.:.:::.|.....:|.:||:..::.|.|
Human   745 --NKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFME 807

  Fly   779 ELKAKYW-------NQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLY----- 831
            :|. |.|       ::||.|        ..:|.|::.|||:....|:|..:..:.:|:.|     
Human   808 DLD-KTWVRYQECDSRSNAP--------ATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKD 863

  Fly   832 YKKKQNALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKPAKVSPPPSFETAT 896
            .::||..|....|                         ..|...:  .:.|..:..|.|. :.||
Human   864 ARRKQMQLAFAAV-------------------------NVWRKNL--QDRKSGRAEPDPK-KKAT 900

  Fly   897 FR 898
            ||
Human   901 FR 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 110/425 (26%)
Lig_chan 520..818 CDD:278489 80/314 (25%)
GRIN1XP_005266130.1 PBP1_iGluR_NMDA_NR1 25..404 CDD:380602 49/280 (18%)
PBP2_iGluR_NMDA_Nr1 416..820 CDD:270437 121/499 (24%)
CaM_bdg_C0 856..884 CDD:402271 6/54 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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