DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and Grin2d

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_038951440.1 Gene:Grin2d / 24412 RGDID:2740 Length:1334 Species:Rattus norvegicus


Alignment Length:608 Identity:145/608 - (23%)
Similarity:243/608 - (39%) Gaps:120/608 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 WSSVGE-MRLLNETISPARRFFRIGTAESIPWSYLRREEG-TGELIRD----RSGL--------- 415
            ||..|. ::.:::|     :...:.|.|..|:..:...:. :|..|||    ||.|         
  Rat   413 WSRYGRFLQPVDDT-----QHLTVATLEERPFVIVEPADPISGTCIRDSVPCRSQLNRTHSPPPD 472

  Fly   416 ------PIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAA 474
                  ...:|:|||.:.||:..:.|.:::.....|..|:..: |.|:|::|::.....|.||.:
  Rat   473 APRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKID-GVWNGMIGEVFYQRADMAIGS 536

  Fly   475 LKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRL-----------EVW-LSIVA 527
            |.:..||.|::||..|:.| ||||:.:.:.....|...|:....|           .|| :..|.
  Rat   537 LTINEERSEIVDFSVPFVE-TGISVMVARSNGTVSPSAFLAFAWLTPPMSPEPYSPAVWVMMFVM 600

  Fly   528 ALVGTAIMIWFMDKYSPYS-SRNNRQAYPYACREFTLRESFW--FALTSFTPQGGGEAPKAISGR 589
            .|...|:.::..:..||.. :|:...........||:.:|.|  :||. |......|.|:..:.:
  Rat   601 CLTVVAVTVFIFEYLSPVGYNRSLATGKRPGGSTFTIGKSIWLLWALV-FNNSVPVENPRGTTSK 664

  Fly   590 MLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNMKF 654
            ::|..:..|.|:.||::|||||||:..|.....|..|...           |.....:.:..:||
  Rat   665 IMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDR-----------KFQRPQEQYPPLKF 718

  Fly   655 AEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADY 719
            .          ...|.|.: |..|. :||....|     .:..:||  ..:|....:.|.: .| 
  Rat   719 G----------TVPNGSTE-KNIRS-NYPDMHSY-----MVRYNQP--RVEEALTQLKAGK-LD- 762

  Fly   720 AFIHDSAEIKYEITRN--CNLTEV--GEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEEL 780
            |||:|:|.:.|...::  |.|..:  |:|||...|.:|:.:||.....:..|:|:...|...|.|
  Rat   763 AFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEML 827

  Fly   781 KAKYWNQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQNALEITQ-- 843
            : :.|......|..:......:.::::.|||...|..:.|:::....|.|.|.:.::.|..|.  
  Rat   828 E-RLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCLGPTHRM 891

  Fly   844 --VRPVNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKPAKVSPPPSFETATFRGKKLP--- 903
              :...:....|..::..|||                    |||..|||         :.||   
  Rat   892 DFLLAFSRGMYSCCSAEAAPP--------------------PAKPPPPP---------QPLPSPA 927

  Fly   904 ---ARITLGDGKFKPRHGLYARR 923
               ||...|...|.||....|.|
  Rat   928 YPAARPPPGPAPFVPRERAAADR 950

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 109/441 (25%)
Lig_chan 520..818 CDD:278489 74/305 (24%)
Grin2dXP_038951440.1 PBP1_iGluR_NMDA_NR2 46..410 CDD:380601
PBP2_iGluR_NMDA_Nr2 427..838 CDD:270436 110/446 (25%)
PHA03307 <1125..>1312 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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