DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and Grin3a

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:895 Identity:189/895 - (21%)
Similarity:333/895 - (37%) Gaps:249/895 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LKELDALR--LDVKVDDTTLTLTR------SEDGLDMQRFCE-ILSTVGASAVIDLTYSHW---- 93
            :.|||.:.  |.:.|    |::.|      |::.|.:|...| .||:.....|..||.::|    
  Rat   206 MMELDLVSSVLHIPV----LSIVRHEFPRESQNPLHLQLSLENSLSSDADVTVSILTMNNWYNFS 266

  Fly    94 ----EEGYNLVRSLGIGYVRLERIMRPFLDMFGDFMRQKRAN---------NVAMVFMNARDAVE 145
                :|.:|:.                      ||:.....|         |:.....:.:|.:.
  Rat   267 LLLCQEDWNIT----------------------DFLLLTENNSKFHLESVINITANLSSTKDLLS 309

  Fly   146 AMQQMLVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQR 210
            .:|..                      ::.||:  ..||.:.......::..|||...:..|  .
  Rat   310 FLQVQ----------------------MDNIRN--STPTMVMFGCDMDSIRQIFEMSTQFGL--S 348

  Fly   211 PLEWHFVFLDTRDRVFKYRRQAELCTRFTLNPRAICRSMPMPDLYCGS------GFTMQRAMLLN 269
            |.|.|:|..|:::       ..||.|          ..:|:..:..|.      .:.:|.||.| 
  Rat   349 PPELHWVLGDSQN-------VEELRT----------EGLPLGLIAHGKTTQSVFEYYVQDAMEL- 395

  Fly   270 VLRSLINAAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDYNWLDMVHWSNFLAYAPPLPHIQDQ 334
            |.|::..|..:.|  .||:..   :|.:..:|...      |.....:.|.|||           
  Rat   396 VARAVATATMIQP--ELALLP---STMNCMDVKTT------NLTSGQYLSRFLA----------- 438

  Fly   335 FQSPVPGLTFAVNISAG----------YYSSEHEAK-----TDLAAWSSVGEMRLLNETISP--A 382
             .:...||:.::.:...          .::.:|:..     |.|.:|.  |...:::..|.|  |
  Rat   439 -NTTFRGLSGSIKVKGSTIISSENNFFIWNLQHDPMGKPMWTRLGSWQ--GGRIVMDSGIWPEQA 500

  Fly   383 RR-----------FFRIGTAESIPWSYLRR--EEG---TGELIRD-------------------R 412
            :|           ..|:.|....|:.:.|.  :||   .|:|..|                   .
  Rat   501 QRHKTHFQHPNKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSMLDRLFSSLHSSN 565

  Fly   413 SGLPI-----WEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAI 472
            ..:||     ..|||||.:.:|::.:||:|::.....|..|.... |.|.|:||||:.|..:.|:
  Rat   566 DTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKN-GHWTGLVGDLLSGTANMAV 629

  Fly   473 AALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIW 537
            .:..:.:.|.:||||..|:: .|.:.|.:|.......:..||..|...:||.|..||..|||.:.
  Rat   630 TSFSINTARSQVIDFTSPFF-STSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAIFLT 693

  Fly   538 FMDKYSPY----SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLF 598
            ..:..||:    ..||..:.:     .|:...:..:||. |......:.||..:||.|:..:.:|
  Rat   694 LYEWKSPFGMTPKGRNRNKVF-----SFSSALNVCYALL-FGRTAAIKPPKCWTGRFLMNLWAIF 752

  Fly   599 VVLMLATFTANLAAFLTVERMQTPVQSLE--QLARQSR-INYTVVKDSDTHQYFVNMKFAEDTLY 660
            .:..|:|:||||||.:..|::...:..:.  :|...|: ..:..|::|....| |...|.|...|
  Rat   753 CMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDY-VRQSFPEMHEY 816

  Fly   661 RMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHDS 725
                         .:::.:...|...||       ..:.|              |..| |||.|.
  Rat   817 -------------MRRYNVPATPDGVQY-------LKNDP--------------EKLD-AFIMDK 846

  Fly   726 AEIKYEIT--RNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQS 788
            |.:.||::  .:|.|..||:.||.:.|.:.:...|.|...:|..|.:.:...|.:.|..|::.. 
  Rat   847 ALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKV- 910

  Fly   789 NLPNCPLSEDQEGIT------LESLGGVFIATLFGLVLAMM-TLGMEVLY 831
                .|..:....:|      ::...|:|:....|..|::: |:|..:::
  Rat   911 ----VPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVH 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 111/451 (25%)
Lig_chan 520..818 CDD:278489 71/312 (23%)
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 68/385 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
ANF_receptor 127..469 CDD:279440 62/355 (17%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 110/439 (25%)
Lig_chan 676..942 CDD:278489 71/312 (23%)
PPP2CB binding site 951..987 1/6 (17%)
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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