DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and glr-8

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001368711.1 Gene:glr-8 / 180924 WormBaseID:WBGene00001619 Length:547 Species:Caenorhabditis elegans


Alignment Length:521 Identity:119/521 - (22%)
Similarity:204/521 - (39%) Gaps:94/521 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   420 GYCIDFIIRLSQKLNFEFEIVAPEVGH-MGE-LNELGEWDGVVGDLVRGETDFAIAALKMYSERE 482
            |..::.:..:.::||..:||: |.:|. .|| ||  |.|.|..|.|||||.|.......|..:|.
 Worm    94 GVVMEILKEIGKRLNLTYEIL-PALGSTWGEYLN--GSWTGAFGQLVRGEVDLLAGGAIMEYDRS 155

  Fly   483 EVIDFLPPY-YEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYS 546
            .:.|...|: :|.|||.|...:.....:|.........|||:...|.::.:.::...|....   
 Worm   156 VIADLTYPFQFEPTGIMIRSPEKYEDDTLLIVTEPFSWEVWVITAAVILISGVIFLVMTNII--- 217

  Fly   547 SRNNRQAYPYACREFTLR--ESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTAN 609
                |:.|    .|.|:.  ||.|...:.|..||..|.|::.|.|:|||.:||..:.:.||||.:
 Worm   218 ----RKVY----EEMTVTPFESIWVFFSIFVQQGLPEQPRSWSCRVLVALWWLASITLSATFTGS 274

  Fly   610 LAAFLTVERMQTPVQSLEQLAR---QSRINYTVVKDSDTHQYFVNMKFAEDTLYR-MWKELALNA 670
            |.|...|::...|.|:::||.|   |.:  :.:|.|.::......:..::..:|| :|.|:.:| 
 Worm   275 LVALFAVDKTNVPFQNIDQLVRLVKQGK--FEIVMDENSFTRTEMIARSKLPVYRDLWHEMIVN- 336

  Fly   671 SKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITRN 735
                               |.:..:|.      ...|.|.|.|  |..||.:...|.:.:....:
 Worm   337 -------------------HKVKYVNG------IARGVAFVRA--NPGYALLGPMATLNFYAYSD 374

  Fly   736 CNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKY-----WNQSNLPNCPL 795
            |.:....:.......::.:.:.|......|..|.|:.:..|.::..|.|     ..:.|..|...
 Worm   375 CKVILFNDGILPVYLSIPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECNSTT 439

  Fly   796 SEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQNALEITQVRPVNDSSGSGGNSSTA 860
            ...:..:.|:...|.|...|.|..|.:.....|.::...::...:.|:             ::|.
 Worm   440 IGPKSYLDLKRAQGAFWVFLGGAGLGLALFVGEFIFKFFREKMTKHTK-------------TTTV 491

  Fly   861 PP-TATSTTKQAWHIPVLEAEEKPAKVSPPPSFETATFRGKKLPARITLGDGKFKPRHGLYARRN 924
            || .||.:...|.:...|:..::....:|.||                 .||.:..|     |||
 Worm   492 PPEVATVSANVAENSTSLDIPDEVLPSAPLPS-----------------EDGNWSLR-----RRN 534

  Fly   925 L 925
            :
 Worm   535 I 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 93/379 (25%)
Lig_chan 520..818 CDD:278489 68/308 (22%)
glr-8NP_001368711.1 PBP2_iGluR_ligand_binding 62..424 CDD:270219 92/373 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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