DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and nmr-2

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001256640.1 Gene:nmr-2 / 180002 WormBaseID:WBGene00003775 Length:990 Species:Caenorhabditis elegans


Alignment Length:779 Identity:175/779 - (22%)
Similarity:300/779 - (38%) Gaps:189/779 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 IALFARAAAMNGIFEKVQKADLFQRPLEWHFVFLDTR-----DRVFKYRRQA-ELCTRFTLNPRA 244
            |.|:|.||....||...:|.|:......|    :.|:     ....|...|| .||..|    ..
 Worm   259 ILLYANAAQAGTIFSHAEKMDMIGEKYLW----IGTQSVKGTQTTVKAPAQAGMLCVNF----HT 315

  Fly   245 ICRSM--PMPDLYCGSGFTMQRAMLLNVLRSLINAA--QVSPGYPLAIYQDCNATASSSEVSDPL 305
            :..:|  |..|:.         .:::.:...|..||  |:.|....::..:   .:..||..|| 
 Worm   316 VSNAMFAPRDDIL---------PLIIQLAPKLFGAALLQLRPNEMFSLKSN---VSCKSEDGDP- 367

  Fly   306 EKDDYNWLDMVHWSN--------FLAYAPPLP-HIQDQFQSPVPGLTF---------AVNISAGY 352
                       :|.|        ..|:....| |:.|...|..  .||         .:.||...
 Worm   368 -----------YWDNGKYIYEHMKAAFVKGNPFHVDDGHDSFF--YTFEKTGRLRNSILQISNLR 419

  Fly   353 YSSEHEAKTDLAAWSSVG-----EMRLLN-----ETISP----ARRF-FRIGTAESIP------- 395
            .:|:.| ||    |..||     |:::.:     |..:|    |.:| .::.|....|       
 Worm   420 TNSKGE-KT----WEKVGIFTNNELKMADVQWPGEKANPPQGAADKFHVKVVTLHEPPFIAVSDV 479

  Fly   396 ----------------WSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEV 444
                            |..:...:|.| :.::|:.|....|||:|.:.:|:..:.|.:.:.....
 Worm   480 DPDTQKCPGNQGSICDWGDVEYTDGAG-VKKNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRD 543

  Fly   445 GHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTS 509
            ...|...|.| |:|::.||:..:.|..:.:||:.|||...|||..|:.: |||||.::......|
 Worm   544 EKWGLKTENG-WNGLIADLMHNKADMCVTSLKLNSERARDIDFSLPFLD-TGISIIVKIRSGVLS 606

  Fly   510 LFKFMTVLRLEVWLSIVAALVG-TAIMIWFMDKYSPYSSRNNRQAYPYACREFTLRESFWFA-LT 572
            ...|:.......|:.|:...:. .||.|:..:..||||.  |.|.||....:|:|..|:|.. .|
 Worm   607 PTAFLEPFEYSTWVIILFVCIHVAAISIFLFEWVSPYSF--NMQKYPPPEHKFSLFRSYWLVWAT 669

  Fly   573 SFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQ--------TPVQSLEQL 629
            .|:.....:.||:...|::...:..|.:..||.:|||||||: :.|:|        .|:.:... 
 Worm   670 LFSASVSTDVPKSTVSRLMALVWAAFGLTFLAVYTANLAAFM-ITRVQYYDLSGIHDPMLNFPH- 732

  Fly   630 ARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLA 694
            .::....:..|...:||          :|:.|.|.::. ...|..|.||                
 Worm   733 DQKPPFRFGTVDGGNTH----------ETMKRNWHKMH-EYVKHNKYFR---------------- 770

  Fly   695 INSSQPVADAKEGFANVDAHENADY-AFIHDSAEIKYEITR--NCNLTEVGEVFAEQPYAVAVQQ 756
            :|.|          |.::|.:|.:. |||:|:..:.|...:  ||.|..||:..:...|.:...:
 Worm   771 MNIS----------AGIEAVKNEELDAFIYDAVVLDYWAGKDANCALMTVGKWASMTGYGIGFPK 825

  Fly   757 GSHLGDELSYAILELQKDRFFEELKAKYW--------NQSNLPNCPLSEDQEGITLESLGGVFIA 813
            .|.....:::.:|:.|:....|.|: .:|        :.|...:.||.       :|:....|:.
 Worm   826 NSPHTSLVNHYMLQYQQKGDLERLQ-NFWLTGACTPDSHSQTQSAPLG-------IENFLSAFVL 882

  Fly   814 TLFGLVLAMMTLGMEVLYYKKKQNALEITQVRPVNDSSGSGGNSSTAPPTATSTTK-----QAW 872
            ...|::::::.||.|.:|....:..|:..      |.:|..|..|.|...:.:.|:     |.|
 Worm   883 LAGGIIVSVIVLGFEHIYCMHLRKPLQKI------DPNGWCGIISMAMGKSLTFTEAVDRVQEW 940

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 105/447 (23%)
Lig_chan 520..818 CDD:278489 72/318 (23%)
nmr-2NP_001256640.1 rSAM_ocin_1 <54..>108 CDD:274893
Periplasmic_Binding_Protein_type1 102..443 CDD:385651 48/222 (22%)
Periplasmic_Binding_Protein_Type_2 460..860 CDD:389745 105/444 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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