DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and glr-1

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_498887.2 Gene:glr-1 / 176204 WormBaseID:WBGene00001612 Length:962 Species:Caenorhabditis elegans


Alignment Length:581 Identity:162/581 - (27%)
Similarity:282/581 - (48%) Gaps:98/581 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 GLTFAVNISAGYYS--SEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREE 403
            |:.|..|.:...:|  |:::.|.:        ::.:|...::|    |.:...|.:..:.|...:
 Worm   435 GVGFFSNRTVAQHSRKSQNDHKDN--------QVIVLTNLVAP----FVMIKRECLEMANLTECQ 487

  Fly   404 GTGELIRDRSGLPIWEGYCIDFIIRLSQKL-NFEFEIVAPEVG-HMGELNELGEWDGVVGDLVRG 466
            |..:          :||:|||.:..|:.|: .|.:||   ::| ..|.....|.|||::|:|:.|
 Worm   488 GNNK----------FEGFCIDLLKLLADKIEEFNYEI---KLGTKAGSKQADGSWDGMIGELLSG 539

  Fly   467 ETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRT-SLFKFMTVLRLEVWLSIVAALV 530
            .....:|:|.:..|||.|:||..|:. .|||||.|:||.::. |:|.||..|..|:|:.|:.|.:
 Worm   540 RAHAVVASLTINQERERVVDFSKPFM-TTGISIMIKKPDKQEFSVFSFMQPLSTEIWMYIIFAYI 603

  Fly   531 GTAIMIWFMDKYSPYSSR---NNRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAISGRMLV 592
            |.:::|:.:.::|||..|   .:|..:..: .:|::....||.|.:|..||....|::||||:..
 Worm   604 GVSVVIFLVSRFSPYEWRVEETSRGGFTIS-NDFSVYNCLWFTLAAFMQQGTDILPRSISGRIAS 667

  Fly   593 AAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNMKFAED 657
            :|:|.|.:::::::|||||||||:|:||.|::|:|.||:||:|.|.:.....|..:|   |::..
 Worm   668 SAWWFFTMIIVSSYTANLAAFLTLEKMQAPIESVEDLAKQSKIKYGIQGGGSTASFF---KYSSV 729

  Fly   658 TLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQP---VADAKEGFANVDAHENADY 719
            .:|:                |:|.|            :.|..|   ||...||...|.:|:.. |
 Worm   730 QIYQ----------------RMWRY------------MESQVPPVFVASYAEGIERVRSHKGR-Y 765

  Fly   720 AFIHDSAEIKYEITRN-CNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAK 783
            ||:.::...:||.||. |:..:||.......|.:|...||...|.::.|||.||:....::|:.|
 Worm   766 AFLLEATANEYENTRKPCDTMKVGANLNSIGYGIATPFGSDWKDHINLAILALQERGELKKLENK 830

  Fly   784 YWNQSNLPNCPLSED--QEGITLESLGGVFIATLFGLVLAMMTLGMEVLY------YKKKQNALE 840
            :|......:..::.|  ...:.|..:.|:|...:.|:|::|:....|.||      .|...|::.
 Worm   831 WWYDRGQCDAGITVDGSSASLNLSKVAGIFYILMGGMVISMLAALGEFLYRSRIEARKSNSNSMV 895

  Fly   841 ITQVRPVNDSSGS-------GGNSSTAPP-----TATSTTKQAWHIPVLEAE-----EKPA 884
            ....:.:..:..|       ||  :.|.|     .|....:.|..:|..|.|     ::||
 Worm   896 ANFAKNLKSALSSQLRLSVEGG--AVAQPGSQSHNAIRRQQVAAFLPANEKEAFNNVDRPA 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 129/412 (31%)
Lig_chan 520..818 CDD:278489 89/306 (29%)
glr-1NP_498887.2 PBP1_iGluR_AMPA 10..439 CDD:107375 1/3 (33%)
ANF_receptor 44..417 CDD:279440
Periplasmic_Binding_Protein_Type_2 457..832 CDD:304360 131/433 (30%)
Lig_chan 593..867 CDD:278489 89/306 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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