DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and glr-2

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001021114.1 Gene:glr-2 / 175999 WormBaseID:WBGene00001613 Length:977 Species:Caenorhabditis elegans


Alignment Length:536 Identity:155/536 - (28%)
Similarity:254/536 - (47%) Gaps:68/536 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 RIGTAESIPWS---------------YLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKL-NF 435
            |.|...|.||.               ..||..|..||    .|...:||||||.:..|::.: .|
 Worm   476 RKGILPSKPWQLRFNVVTVLVKPFVMLKRRNPGEPEL----KGNDRFEGYCIDLLNLLAKNITGF 536

  Fly   436 EFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIA 500
            |:::...:....|.....|.|||::|.|:....|.|:|.|.:..|||..:||..|:. .|||||.
 Worm   537 EYDVFISDGNKYGSRQADGSWDGMIGYLLNETADVAVAPLTITQERERAVDFSKPFM-TTGISIM 600

  Fly   501 IRKPVRRT-SLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPY-ACREFTL 563
            |:||.::. ::|.||..|.:.:|:..:::..|.::.|:.:..:|||..|...:...: ...||||
 Worm   601 IKKPEKQEFNIFSFMEPLGMTIWIFTLSSYFGVSLTIFLVSWFSPYEKRIEFKRGEFTVTNEFTL 665

  Fly   564 RESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQ 628
            ..|.||.|.:|..||....|:|:|||:..:.:|.|.:::::::|||||||||:|||..|::|:|.
 Worm   666 YNSLWFTLAAFMQQGTDILPRAVSGRIASSCWWFFTLIIVSSYTANLAAFLTLERMTPPIESVED 730

  Fly   629 LARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILL 693
            ||.|::|.|.|.:...|..:|      ||::..::|             ::|::.:......|.|
 Worm   731 LANQNKILYGVNEGGSTAAFF------EDSIVPLYK-------------KMWNFMVSTTQKQIEL 776

  Fly   694 ---AINSSQP----VADAKEGFANVDAHENADYAFIHDSAEIKYEITRN-CNLTEVGEVFAEQPY 750
               :|.:|..    |:...:|...|.. ....|||:.:.....||..|. |:..:||:......|
 Worm   777 EKQSITNSTSNRIFVSSYADGIEKVRT-SKGKYAFLLEETTNNYESGRRPCDTMKVGQNLNTLGY 840

  Fly   751 AVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSEDQEG----ITLESLGGVF 811
            .:|.:.|:.|...|:.|||.|.:....::|:.|:|....  .|.......|    :.|..:.|:|
 Worm   841 GIATKIGNPLRVSLNLAILYLSEKGELKKLENKWWYDRG--QCDTGTSDGGTSSSLNLSKVAGIF 903

  Fly   812 IATLFGLVLAMMTLGMEVLYYKKKQN-ALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQAWHIP 875
            ...|.|:||:|.|..:|.|:.|.|:| ..|..::|          :|....|...::.::|....
 Worm   904 YILLAGMVLSMCTALVEFLFRKNKENREKERNRMR----------SSRPLKPGILASCERAKQKQ 958

  Fly   876 VLEAEEKPAKVSPPPS 891
            :.....|..:||.|.|
 Worm   959 LQNRRTKSEEVSTPRS 974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 128/424 (30%)
Lig_chan 520..818 CDD:278489 86/310 (28%)
glr-2NP_001021114.1 Periplasmic_Binding_Protein_Type_1 7..453 CDD:299141
Periplasmic_Binding_Protein_Type_2 491..875 CDD:304360 123/408 (30%)
Lig_chan 621..910 CDD:278489 86/310 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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