DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir8a and gria2b

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_005157361.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:897 Species:Danio rerio


Alignment Length:818 Identity:187/818 - (22%)
Similarity:341/818 - (41%) Gaps:178/818 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 WEEGYNLVRSLGIGYVRLERIMRPFLDMFGDFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFR 157
            |:     |.::.:|.::.||....:..:|.|...:|.                           |
Zfish   172 WQ-----VTAINVGNMKDERKDEAYRSLFQDLENKKE---------------------------R 204

  Fly   158 TLIMDASQTDPGQHFLERIRSL-RPAPTYIALFARAAAMNGIFEKVQKADL---------FQRPL 212
            .:|:|..| |..:..:|::.:: |....|..:.|....::|...|:|....         |..||
Zfish   205 RVILDCEQ-DKVKDIMEQVITIGRHVKGYHYIIANLGFVDGDLSKIQYGGANVSGFQIVDFDDPL 268

  Fly   213 EWHFVFLDTRDRVFKYRRQ--AELCTRFTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLI 275
            ...|   |.|....:.:..  |:...|:|                  |..|.....::......:
Zfish   269 VSKF---DQRWEALEEKEYPGADSKIRYT------------------SALTYDAVQVMTEAFRYL 312

  Fly   276 NAAQVSPGYPLAIYQDCNATASSSE-VSDPLEKDDYNWLDMVHWSNFLAYAPPLPHIQDQFQSPV 339
            :..::          |.:..|::.: :::|          .|.|:..:.....|..::      |
Zfish   313 HKQRI----------DISRRANNGDCLANP----------AVPWAQGVEIERALKQVR------V 351

  Fly   340 PGLT---------FAVNISAGYYSSEHEAKTDLAAWSSVGEMRLL------NETISPARRFFRIG 389
            .|||         ..||.:......:......:..|:.|.:|.:.      |:|:....:...:.
Zfish   352 DGLTGNIQFDQYGKRVNYTVNVMELKSNGAVKIGYWNEVDKMVVTKSDLFPNDTMGLENKTVIVT 416

  Fly   390 TAESIPWSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELN-EL 453
            |....|:..|::   ..:|..|...   :||||:|....:::...|::::.....|..|..: |.
Zfish   417 TILEAPYVMLKK---NADLFMDNER---YEGYCVDLAAEIAKHCGFKYQLKIVGDGKYGARDAET 475

  Fly   454 GEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVR-RTSLFKFMTVL 517
            ..|:|:||:||.|:.|.|:|.|.:...|||||||..|:. ..||||.|:||.: :..:|.|:..|
Zfish   476 KIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFM-SLGISIMIKKPQKSKPGVFSFLDPL 539

  Fly   518 RLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYP-------YACREFTLRESFWFALTSFT 575
            ..|:|:.||.|.:|.:::::.:.::|||..  :.:.|.       .:..||.:..|.||:|.:|.
Zfish   540 AYEIWMCIVFAYIGVSVVLFLVSRFSPYEW--HTEEYEDGQIQTNESTNEFGIFNSLWFSLGAFM 602

  Fly   576 PQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVV 640
            .||...:|:::|||::...:|.|.:::::::|||||||||||||.:|::|.|.||:|:.|.|..:
Zfish   603 RQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTL 667

  Fly   641 KDSDTHQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQP---VA 702
            ....|.::|...|.|   |:.                ::|.|            :..::|   |.
Zfish   668 DSGSTKEFFRRSKIA---LFD----------------KMWTY------------MKGAEPSVFVK 701

  Fly   703 DAKEGFANVDAHENADYAFIHDSAEIKY-EITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSY 766
            ...||...| ......||::.:|...:| |..:.|:..:||.....:.|.:|..:||.|.:.::.
Zfish   702 TTAEGVMRV-RKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNL 765

  Fly   767 AILELQKDRFFEELKAKYWNQSNLPNC-----PLSEDQEGITLESLGGVFIATLFGLVLAMMTLG 826
            |:|:|.:....::||.|:|....  .|     ...|....::|.::.|||...:.||.|||:...
Zfish   766 AVLKLNEQGLLDKLKNKWWYDKG--ECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVAL 828

  Fly   827 MEVLYYKKKQ---------NALEITQVRPVNDSSGSGG 855
            :|..|..:.:         :|:.......|..|:|..|
Zfish   829 VEFCYKSRAEAKRMKVTFSDAMRSKARLSVTGSTGENG 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 120/415 (29%)
Lig_chan 520..818 CDD:278489 84/313 (27%)
gria2bXP_005157361.1 PBP1_iGluR_AMPA_GluR2 27..395 CDD:107384 46/302 (15%)
ANF_receptor 55..377 CDD:279440 43/284 (15%)
PBP2_iGluR_AMPA 410..790 CDD:270433 121/422 (29%)
Lig_chan 542..820 CDD:278489 84/313 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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