DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and gria2a

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:884 Identity:209/884 - (23%)
Similarity:372/884 - (42%) Gaps:172/884 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 DGLDMQRFCEILSTVGASAVIDLTYSHWEEG---YNLVRSLGIGYVRLERIMRPFLDMFGDFMRQ 127
            |||: |...::...:....:..:.|..||:.   |:..|.|.        .::..||...:...|
Zfish   114 DGLN-QFVLQMRPDIKGPLISLVEYYKWEKFAYLYDSDRGLS--------TLQAVLDTAAERKWQ 169

  Fly   128 KRANNVAMVFMNARD-----AVEAMQQMLVGYPFRTLIMDASQTDPGQHFLERIRSL-RPAPTYI 186
            ..|.||.    |.:|     |..::.|.|.....|.:|:|..| |..:..:|::.:: |....|.
Zfish   170 VTAINVG----NLKDEWKDEAYRSLFQDLENKNERRVILDCEQ-DKVKDIMEQVITIGRHVKGYH 229

  Fly   187 ALFARAAAMNGIFEKVQKADL---------FQRPLEWHFVFLDTRDRVFKYRRQ--AELCTRFTL 240
            .:.|....::|...|:|....         |..||...|   |.|....:.:..  |:...|:| 
Zfish   230 YIIANFGFVDGDLSKIQYGGANVSGFQIVDFDDPLVAKF---DQRWEALEEKEYPGADSRIRYT- 290

  Fly   241 NPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGYPLAIYQDCNATASSSE-VSDP 304
                             |..|.....::......::..::          |.:...::.: :::|
Zfish   291 -----------------SALTYDAVQVMTEAFRFLHKQRI----------DISRRGNNGDCLANP 328

  Fly   305 LEKDDYNWLDMVHWSNFLAYAPPLPHIQDQFQSPVPGLT---------FAVNISAGYYSSEHEAK 360
                      .|.|:..:.....|..::      |.|||         ..||.:......::...
Zfish   329 ----------AVPWAQGVEIERALKQVR------VDGLTGNIQFDQYGRRVNYTVNVMELKNSGP 377

  Fly   361 TDLAAWSSVGEMRLL------NETISPARRFFRIGTAESIPWSYLRREEGTGELIRDRSGLPIWE 419
            ..:..|:.:.:|.:.      |:|:....:...:.|....|:..|::   ..||..|...   :|
Zfish   378 VKIGYWNEMDKMAVTKSDLFPNDTMGMENKTVIVTTILEAPYVMLKK---NAELFTDNER---YE 436

  Fly   420 GYCIDFIIRLSQKLNFEFEIVAPEVGHMGELN-ELGEWDGVVGDLVRGETDFAIAALKMYSEREE 483
            |||:|....:::...|::::.....|..|..: |...|:|:||:||.|:.|.|:|.|.:...|||
Zfish   437 GYCVDLAAEIAKHCGFKYQLRIVADGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREE 501

  Fly   484 VIDFLPPYYEQTGISIAIRKPVR-RTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSS 547
            ||||..|:. ..||||.|:||.: :..:|.|:..|..|:|:.||.|.:|.:::::.:.::|||..
Zfish   502 VIDFSKPFM-SLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEW 565

  Fly   548 RNNR----QAYP-YACREFTLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFT 607
            ....    |..| .:..||.:..|.||:|.:|..||...:|:::|||::...:|.|.:::::::|
Zfish   566 HTEEFEDGQLGPSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYT 630

  Fly   608 ANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNMKFAEDTLY-RMWKELALNAS 671
            ||||||||||||.:|::|.|.||:|:.|.|..:....|.::|...|.|   |: :||        
Zfish   631 ANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIA---LFDKMW-------- 684

  Fly   672 KDFKKFRIWDYPIKEQYGHILLAINSSQP---VADAKEGFANVDAHENADYAFIHDSAEIKY-EI 732
                           ||      :.|::|   |.:..||...| ......||::.:|...:| |.
Zfish   685 ---------------QY------MKSAEPSVFVKNTVEGVLRV-RKSKGKYAYLLESTMNEYIEQ 727

  Fly   733 TRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSE 797
            .:.|:..:||.....:.|.:|..:||.|.:.::.|:|:|.:....::||.|:|...........|
Zfish   728 RKPCDTMKVGGNLDSKGYGIATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGE 792

  Fly   798 DQE---GITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQ---------NALEITQVRPVNDS 850
            .:|   .::|.::.|||...:.||.|||:...:|..|..:.:         :|:.......:..|
Zfish   793 SKEKTSALSLSNVAGVFYILVGGLGLAMLVALVEFCYKSRAEAKRMKMTFTDAMRSKARLSITGS 857

  Fly   851 SGSGGNSSTAPPTATSTTKQAWH-IPVLEAEEKPAKVSP 888
            :|..|.      ..|....:|.| :|.|    :|....|
Zfish   858 TGENGR------VLTPDFSKAVHAVPYL----RPGMAMP 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 125/414 (30%)
Lig_chan 520..818 CDD:278489 88/310 (28%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 57/337 (17%)
ANF_receptor 51..373 CDD:279440 55/319 (17%)
PBP2_iGluR_AMPA 406..783 CDD:270433 126/416 (30%)
Lig_chan 538..816 CDD:278489 88/310 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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