DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and Grid1

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:1024 Identity:224/1024 - (21%)
Similarity:377/1024 - (36%) Gaps:318/1024 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 ALRLDVKVDDTTLTLTRSEDGLDMQRFCEILSTVGASAVIDLTYSHWEEGYNLVRSLGIGYVRLE 111
            |.|..|:::|..|.|...   |..|:|                ...::..|::            
Mouse   142 ASRPPVRLNDVMLRLVTE---LRWQKF----------------VMFYDSEYDI------------ 175

  Fly   112 RIMRPFLDMFG----DFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFRTLIMDASQTDPGQHF 172
            |.::.|||...    |...||...|::.||                    |.:....:|:.    
Mouse   176 RGLQSFLDQASRLGLDVSLQKVDKNISHVF--------------------TSLFTTMKTEE---- 216

  Fly   173 LERIR-SLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWHFVFLDTRDRVFKYRRQAELCT 236
            |.|.| :||.|   |.|.:...|.:.|.|.|: .:|..:...|.||..:..|             
Mouse   217 LNRYRDTLRRA---ILLLSPQGAHSFINEAVE-TNLASKDSHWVFVNEEISD------------- 264

  Fly   237 RFTLNPRAICRSMPMPDLYCGSGFTMQRAML--LNVLRSLINAAQVSPGYPLAIYQDC--NATAS 297
                           |::     ..:..:.|  :.|:|.:..:|:.:        |.|  |....
Mouse   265 ---------------PEI-----LDLVHSALGRMTVVRQIFPSAKDN--------QKCMRNNHRI 301

  Fly   298 SSEVSDPLEKDDYNWLDMVHWSNFLAYAPPL-------PHIQDQ-----------FQSPVP---G 341
            ||.:.||.|    .:|.|:..||...|...|       ..::|:           .:|..|   |
Mouse   302 SSLLCDPQE----GYLQMLQISNLYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGG 362

  Fly   342 LTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAES----------IPW 396
            .:....|..|:.:            ...|.|....::.:|..:|..:||..|          ..|
Mouse   363 RSMLDTIKKGHIT------------GLTGVMEFREDSSNPYVQFEILGTTYSETFGKDMRKLATW 415

  Fly   397 SYLRREEGTGELIRDR------SGLPI-----------------------WEGYCIDFIIRLSQK 432
            .   .|:|....:::|      .||.:                       ::|:.||.:..|::.
Mouse   416 D---SEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVMVAENILGQPKRYKGFSIDVLDALAKA 477

  Fly   433 LNFEFEIVAPEVGHMGELNELGEWDGVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGI 497
            |.|::||.....|..|.......|:|::|:|:....|.||:|:.:..|||.|:||...|.:.: :
Mouse   478 LGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYS-V 541

  Fly   498 SIAIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNNRQAYPYACREFT 562
            .|.|:||..:.|:|.........||..|.||:....::|:.:::.....|::..|..|.|  ..|
Mouse   542 GILIKKPEEKISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQAVRSQSATQPRPSA--SAT 604

  Fly   563 LRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE 627
            |..:.|....:|..|||..:..:::.|:::.::|||.:::.:::||||||||||.||..|:::.:
Mouse   605 LHSAIWIVYGAFVQQGGESSVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQ 669

  Fly   628 QLARQSRINYTVVKDSDTHQYF----VNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQY 688
            .|::|..::|..|:||..::||    .|....:.|...:|:.::.|...|               
Mouse   670 DLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGAD--------------- 719

  Fly   689 GHILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEIKYEITR--NCNLTEVGEVFAEQPYA 751
               ....|.|:.:..||:|          :|||:.|.|.::|....  :|::|.:|...:.:.|.
Mouse   720 ---NCVSNPSEGIRKAKKG----------NYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYG 771

  Fly   752 VAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPL----SEDQEG--ITLESLGGV 810
            :|:|.||...|..|..|||||.....:.||.|:|..:.  .|.|    |...||  :.|.|..||
Mouse   772 IALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTG--RCDLTSHSSTQTEGKSLKLHSFAGV 834

  Fly   811 FIATLFGLVLAMMTLGMEVLYYKKK---------------------------------------- 835
            |.....||:||.:...:|:.:...:                                        
Mouse   835 FCILAIGLLLACLVAALELWWNSNRCHQETPKEDKEVNLEQVHRRINSLMDEDIAHKQISPASIE 899

  Fly   836 ---------------------QNA-LEITQVRPVNDSSG-----SGGNSSTAP-PTATSTTKQAW 872
                                 ||. |.::...|...|.|     |.|.||..| |.::|.|    
Mouse   900 LSALEMGGLAPSQALEPTREYQNTQLSVSTFLPEQSSHGTSRTLSSGPSSNLPLPLSSSAT---- 960

  Fly   873 HIPVLEAE----------EKPAKVSPPPSFETATFRGKKLPARITLGDG 911
             :|.::.:          :.|.|...|.||:...  |..||..:....|
Mouse   961 -MPSIQCKHRSPNGGLFRQSPVKTPIPMSFQPVP--GGVLPEALDTSHG 1006

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 117/447 (26%)
Lig_chan 520..818 CDD:278489 87/309 (28%)
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 75/412 (18%)
PBP1_iGluR_delta_1 25..423 CDD:107387 74/399 (19%)
PBP2_iGluR_delta_1 436..806 CDD:270448 109/400 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960 10/28 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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