DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir8a and grin1b

DIOPT Version :9

Sequence 1:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001137603.1 Gene:grin1b / 100005675 ZFINID:ZDB-GENE-051202-2 Length:937 Species:Danio rerio


Alignment Length:974 Identity:212/974 - (21%)
Similarity:384/974 - (39%) Gaps:235/974 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 ELDALRLDVKVDDTTLTLTRSEDGLDMQRFCEILS----------------TVG--ASAVIDLT- 89
            :::|:.:..|.:...:.|:..||.:..|.:..::|                |.|  ...|:.|| 
Zfish    56 KMNAISVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT 120

  Fly    90 ----YSHWEEGYNLVRSLGIGYVRLERIMRPF---LDMFGDFMRQKRANNVAMVFMNARDAVEAM 147
                ||.        :|:.:.::   |.:.|:   ..::.|.||:.:.|::.::..:..:...|.
Zfish   121 RMSIYSD--------KSIHLSFL---RTVPPYSHQAQVWFDMMREFQWNHIILIVSDDHEGRAAQ 174

  Fly   148 QQMLVGYPFRTLIMDASQTDPGQHFLERIRSLR------PAPTYIALFARAAAMNGIFEKVQKAD 206
            :::      .||:.:.......::: |.:..|.      |....:.||::...:..:.::.::  
Zfish   175 KRL------ETLLEERETKSKNRNY-ENLDQLSFDNKRGPKAEKVLLFSQDTNLTALLQEAKE-- 230

  Fly   207 LFQRPLEWHFVFL----DTRDRVFKYRRQAELCTRFTLNPRAICRSMPMPDLYCGSGFTM---QR 264
                 ||...:.|    |....::|..||..:                     .|||:..   :|
Zfish   231 -----LEARVIILSASEDEAAAIYKVARQLNM---------------------TGSGYVWLVGER 269

  Fly   265 AM-----------LLNVLRSLINAAQVSPGYPLAIYQDCNATASSSEVSDPLEKDDYNW--LDMV 316
            .|           ||.:  .|||....|     |...|..|..:.| :.:..||::...  ...|
Zfish   270 EMSGKALSEAPDGLLGL--QLINGKNES-----AHIYDAVAVVAQS-IQELFEKENITEPPRGCV 326

  Fly   317 HWSNFLAYAPPLPHIQDQFQSPVPGLTFAVNIS------AGYYSSEHEAKTDLAAWSSV-GEMRL 374
            ..:|.....|....:....:.| .|||..|..:      ..:||..:..||.|...... |...:
Zfish   327 GNTNIWKTGPLFKRVLMSSKYP-DGLTGRVEFNDDGDRRFAHYSILNYQKTRLVQVGVYNGSQVV 390

  Fly   375 LN----------ETISP-----ARRFFRIGTAESIPWSYLR--------REE------------- 403
            :|          ||..|     :.| .:|.|....|:.|::        :||             
Zfish   391 MNAQRKIIWPGGETEKPKGYQMSTR-LKIVTIHQEPFVYVKPTLRDGTCKEEHTVNGVKIKKVIC 454

  Fly   404 -GTGELIRDRSGLP-IWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELG-----EWDGVVG 461
             |..|.|..|..:| ...|:|||.:|:|:..:||.:|:.....|..|....:.     ||:|::|
Zfish   455 TGPNETIPGRPIVPQCCYGFCIDLLIKLAFTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMG 519

  Fly   462 DLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIV 526
            :|:.|..|..:|.|.:.:||.:.|:|..|:..| |::|.::|.:.|::|..||...:..:||.:.
Zfish   520 ELLSGLADMIVAPLTINNERAQYIEFSKPFKYQ-GLTILVKKEIPRSTLDSFMQPFQSTLWLLVG 583

  Fly   527 AALVGTAIMIWFMDKYSPY------SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGE-APK 584
            .::...|:|::.:|::||:      |......|       .||..:.||:.......|.|| ||:
Zfish   584 LSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDA-------LTLSSAMWFSWGVLLNSGIGEGAPR 641

  Fly   585 AISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLE--QLARQS-RINYTVVKDSDTH 646
            :.|.|:|...:..|.::::|::||||||||.::|.:..:..:.  :|...| :..|..||.|...
Zfish   642 SFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVD 706

  Fly   647 QYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANV 711
            .|| ..:....|:||..:                    |..|.....||   |.|.|        
Zfish   707 IYF-RRQVELSTMYRHME--------------------KHNYESAAEAI---QAVRD-------- 739

  Fly   712 DAHENADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRF 776
                |..:|||.|||.:::|.::.|:|...||:|....:.:.:::.|.....:|.|||...::.|
Zfish   740 ----NKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLAILSSHENGF 800

  Fly   777 FEELKAKYW-------NQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYKK 834
            .|:|. |.|       ::||.|        ..:|.|::.|||:....|:|..:..:.:|:.|.:.
Zfish   801 MEDLD-KTWVRYQECDSRSNAP--------ATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRH 856

  Fly   835 K-------QNALEITQVRPVNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKPAKVSPPPS 891
            |       |.|.....|...|......|.:...|....|....:.::.......:.:|.:|.|:
Zfish   857 KDARRKQMQLAFAAVNVWRKNLQDRKSGRAEPDPKKKASFRSISTNLASNIKRRRSSKDTPYPT 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 118/447 (26%)
Lig_chan 520..818 CDD:278489 81/314 (26%)
grin1bNP_001137603.1 PBP1_iGluR_NMDA_NR1 5..401 CDD:107374 68/399 (17%)
ANF_receptor 36..372 CDD:279440 63/370 (17%)
PBP2_iGluR_NMDA_Nr1 413..815 CDD:270437 118/447 (26%)
Lig_chan 577..840 CDD:278489 81/314 (26%)
CaM_bdg_C0 851..879 CDD:287524 6/27 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.