DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31296 and Glipr1

DIOPT Version :9

Sequence 1:NP_001262608.1 Gene:CG31296 / 318668 FlyBaseID:FBgn0051296 Length:280 Species:Drosophila melanogaster
Sequence 2:NP_001011987.1 Gene:Glipr1 / 299783 RGDID:1305978 Length:251 Species:Rattus norvegicus


Alignment Length:137 Identity:32/137 - (23%)
Similarity:54/137 - (39%) Gaps:31/137 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NNPSKFSVMCPPNARTLSMSTYRNLL---LIAFNEFRN--YTASGKQKYLKAAAARMSRLSYSME 98
            ::.|.||.    .|.||...|..:.:   :...|.||:  |..:|...|          :|:..:
  Rat    13 SSASGFSY----TASTLPKITNEDFIEECVEVHNHFRSKAYPPAGNMLY----------MSWDPK 63

  Fly    99 LEDLARLAVITC-STHKFCLNSQ---EFYYVGTNIGSTHYLGNLNDYEDLELMLRIIQHWTRYAD 159
            |..:|:....:| ..|...|:|:   .|..:|.||    :||:|:    |..:...|..|...:.
  Rat    64 LAQIAKAWAQSCVFQHNPQLHSRIHPNFTGLGENI----WLGSLS----LFSVRAAILAWFEESQ 120

  Fly   160 YVNIKMG 166
            |.:...|
  Rat   121 YYDFSTG 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31296NP_001262608.1 SCP_euk 61..214 CDD:240180 25/115 (22%)
Glipr1NP_001011987.1 CAP 32..168 CDD:412178 25/114 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.