DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-Ic and Edem3

DIOPT Version :10

Sequence 1:NP_733331.1 Gene:alpha-Man-Ic / 318624 FlyBaseID:FBgn0051202 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_006529858.1 Gene:Edem3 / 66967 MGIID:1914217 Length:948 Species:Mus musculus


Alignment Length:604 Identity:147/604 - (24%)
Similarity:239/604 - (39%) Gaps:177/604 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VIRRAQYNWYTANTKSRIRIIATGIFTVGVIVITYIQCRAMMRESFQKNIPSNDNSLKDMNPDDM 71
            |.:||.:: ..|.|.:...::||.:.|.|        ...|.||..||                :
Mouse    14 VPQRASWS-LVAATAALCLVLATSVCTAG--------AAPMSREEKQK----------------L 53

  Fly    72 RAKIKEMMMHAWRNYARVVWGTNEFRPISRRVHFGG--------DFATYKLGATIIESLDTLHLM 128
            ..::.||..||:.||....:..:|..|::.|....|        |.|..|...|:|:|||||.::
Mouse    54 GNQVLEMFDHAYGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVL 118

  Fly   129 GLNKELRRSRDWIEKSFHLDRVDEALSVYELTSRLLCPMLTLYSLT------GDSL--YMDKAIH 185
            ...||...:...:.:..:||. |..:||:|...|:|..:|..:||.      |:.:  |.|:.:|
Mouse   119 NKTKEFEDAVRKVLRDVNLDN-DVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEHMQWYNDELLH 182

  Fly   186 IAD----KILPAFDTPTGIPRRLVVPK------EGSTLTKYLSDISRTSEFGSLHLEFYYLSEVS 240
            :|.    |:||||:|.:|:|...:..|      |..|.|:  :| :.|:..|:|.|||..||..:
Mouse   183 MAKQLGYKLLPAFNTTSGLPYPRINLKFGIRKPEARTGTE--TD-TCTACAGTLILEFAALSRFT 244

  Fly   241 GYPVY----RERVDAIREILAKTTRPNGLYPNAYCTKFGKW----ENYNCSMHRLYDTLLKSWIQ 297
            |..::    |:.:|.:.|...:::...|:..|.:.   |.|    ......:...|:.|||:::.
Mouse   245 GATIFEEYARKALDFLWEKRQRSSNLVGVTINIHT---GDWVRKDSGVGAGIDSYYEYLLKAYVL 306

  Fly   298 SG------RTDTQ------------------------NADTFKEAMLAVAQNLVVINPEDVTYVS 332
            .|      |.:|.                        ||.|:.:|:||....|.|:..:....:.
Mouse   307 LGDDSFLERFNTHYDAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIE 371

  Fly   333 TFRNGTLFHRM------RHSDCFAGGLFVLGAAETQMK-HWEKYAHIGIGLTDTCHDSYWSSPTR 390
            |       |.|      :|:       |:..|..|..: ||.::.                    
Mouse   372 T-------HEMLYQVIKKHN-------FLPEAFTTDFRVHWAQHP-------------------- 402

  Fly   391 LGPDTFAFTEESQQEIEPLQRNYYNLRPEVAETYLVLWRITHHPQYRLWGLEMVQAIEKYCRMPY 455
                                     ||||.||:...|::.|..|.|...|..:::.:.||.|:|.
Mouse   403 -------------------------LRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPC 442

  Fly   456 GYTGVMDVNNVTSEPDDVQGSFFLGSTLKYLYLLFSD--DDVVSLEQWVFNSAGHFLPI------ 512
            |:..:.||.  |...:|...||||....|||||||:|  |.:..:|.::|.:..|.||:      
Mouse   443 GFAAMKDVR--TGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTN 505

  Fly   513 -----KGVNPMYRQHNSSN 526
                 |.....|.:.:.||
Mouse   506 RSISKKNTTSEYTELDDSN 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IcNP_733331.1 Glyco_hydro_47 78..512 CDD:460241 127/506 (25%)
Edem3XP_006529858.1 Glyco_hydro_47 60..499 CDD:460241 127/506 (25%)
PA_EDEM3_like 666..791 CDD:239041
DMP1 <814..915 CDD:462128
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.