DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-Ic and edem3

DIOPT Version :9

Sequence 1:NP_733331.1 Gene:alpha-Man-Ic / 318624 FlyBaseID:FBgn0051202 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_005166989.2 Gene:edem3 / 559811 ZFINID:ZDB-GENE-070801-5 Length:888 Species:Danio rerio


Alignment Length:520 Identity:124/520 - (23%)
Similarity:212/520 - (40%) Gaps:139/520 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 MNPDD---MRAKIKEMMMHAWRNYARVVWGTNEFRPISRRVHFGG--------DFATYKLGATII 119
            |:.|:   :|.::.||..||:|||....:..:|..|::.|....|        |.|..|...|:|
Zfish    29 MSRDEKSKLRIQVLEMFDHAYRNYMDHAYPADELMPLTCRGRVRGLEPSRGDVDDALGKFSLTLI 93

  Fly   120 ESLDTLHLMGLNKELRRSRDWIEKSFHLDRVDEALSVYELTSRLLCPMLTLYSL------TGDSL 178
            ::||||.|:....|...:...:.|...||. |..:||:|...|:|..:|..:|:      .|..:
Zfish    94 DTLDTLALLNKTVEFEEAVRRVVKDVRLDN-DIVVSVFETNIRVLGGLLGGHSMAVMLKENGQMV 157

  Fly   179 -YMDKAIHIAD----KILPAFDTPTGIPRRLVVPKEG----STLTKYLSDISRTSEFGSLHLEFY 234
             |.::.:|:|.    ::||||:|.:|:|...|..:.|    .|.|...:: :.|:..|::.|||.
Zfish   158 WYQNELLHMAKDLGLRLLPAFNTSSGLPYPRVNLRHGVHGPETRTGTETE-TCTACAGTIILEFA 221

  Fly   235 YLSEVSGYPVY----RERVDAIREILAKTTRPNGLYPNAYCTKFGKW----ENYNCSMHRLYDTL 291
            .||..:|.|.:    |..:|.:.|   |..|.:.|.........|:|    ......:...|:.|
Zfish   222 ALSRFTGDPTFEAHARRALDFLWE---KRQRNSNLVGTTINIHSGEWVRRDSGVGAGIDSYYEYL 283

  Fly   292 LKSWIQSG------RTDTQNAD------------------------TFKEAMLAVAQNLVVINPE 326
            :|::|..|      |.:|..|.                        |:.:::||....|.|:..:
Zfish   284 MKAYILLGDDQLLLRFNTHYASIMKYISQPPLLLDVHIHKPLLPARTWMDSLLAFFPGLQVLKGD 348

  Fly   327 DVTYVSTFRNGTLFHRM------RHSDCFAGGLFVLGAAETQMK-HWEKYAHIGIGLTDTCHDSY 384
            ....:.|       |.|      :|:       |:..|..|..: ||.::.              
Zfish   349 IRPAIET-------HEMLYQVTKKHN-------FLPEAFTTDFRVHWAQHP-------------- 385

  Fly   385 WSSPTRLGPDTFAFTEESQQEIEPLQRNYYNLRPEVAETYLVLWRITHHPQYRLWGLEMVQAIEK 449
                                           ||||.||:...|::.|..|.|...|..:::.:.:
Zfish   386 -------------------------------LRPEFAESTYFLYKATRDPYYLEVGRTVLENLNR 419

  Fly   450 YCRMPYGYTGVMDVNNVTSEPDDVQGSFFLGSTLKYLYLLFSDDDVV--SLEQWVFNSAGHFLPI 512
            :.|:|.|:..:.||.  |...:|...||||....|||:|||::::.:  ::|.:||.:..|.||:
Zfish   420 FARVPCGFAAMKDVR--TGSHEDRMDSFFLAEMFKYLFLLFAEEEDLPFNVEDYVFTTEAHLLPL 482

  Fly   513  512
            Zfish   483  482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IcNP_733331.1 Glyco_hydro_47 78..512 CDD:279825 119/503 (24%)
edem3XP_005166989.2 Glyco_hydro_47 44..482 CDD:307602 119/503 (24%)
PA_EDEM3_like 644..770 CDD:239041
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583846
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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