DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-Ic and Edem3

DIOPT Version :9

Sequence 1:NP_733331.1 Gene:alpha-Man-Ic / 318624 FlyBaseID:FBgn0051202 Length:526 Species:Drosophila melanogaster
Sequence 2:XP_038946376.1 Gene:Edem3 / 289085 RGDID:1561496 Length:949 Species:Rattus norvegicus


Alignment Length:604 Identity:147/604 - (24%)
Similarity:238/604 - (39%) Gaps:177/604 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VIRRAQYNWYTANTKSRIRIIATGIFTVGVIVITYIQCRAMMRESFQKNIPSNDNSLKDMNPDDM 71
            |.:||.:: ..|.|.:...::||.:.|.|        ...|.||..||                :
  Rat    14 VPQRASWS-LVAATAALYLMLATTVCTAG--------AAPMSREEKQK----------------L 53

  Fly    72 RAKIKEMMMHAWRNYARVVWGTNEFRPISRRVHFGG--------DFATYKLGATIIESLDTLHLM 128
            ..::.||..||:.||....:..:|..|::.|....|        |.|..|...|:|:|||||.::
  Rat    54 GNQVLEMFDHAYGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVL 118

  Fly   129 GLNKELRRSRDWIEKSFHLDRVDEALSVYELTSRLLCPMLTLYSLT------GDSL--YMDKAIH 185
            ...||...:...:.:..:||. |..:||:|...|:|..:|..:||.      |:.:  |.|:.:.
  Rat   119 NKTKEFEDAVRKVLRDVNLDN-DVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYMQWYNDELLQ 182

  Fly   186 IAD----KILPAFDTPTGIPRRLVVPK------EGSTLTKYLSDISRTSEFGSLHLEFYYLSEVS 240
            :|.    |:||||:|.:|:|...:..|      |..|.|:  :| :.|:..|:|.|||..||..:
  Rat   183 MAKQLGYKLLPAFNTTSGLPYPRINLKFGIRKPEARTGTE--TD-TCTACAGTLILEFAALSRFT 244

  Fly   241 GYPVY----RERVDAIREILAKTTRPNGLYPNAYCTKFGKW----ENYNCSMHRLYDTLLKSWIQ 297
            |..|:    |:.:|.:.|...:::...|:..|.:.   |.|    ......:...|:.|||:::.
  Rat   245 GATVFEEYARKALDFLWEKRQRSSNLVGVTINIHT---GDWVRKDSGVGAGIDSYYEYLLKAYVL 306

  Fly   298 SG------RTDTQ------------------------NADTFKEAMLAVAQNLVVINPEDVTYVS 332
            .|      |.:|.                        ||.|:.:|:||....|.|:..:....:.
  Rat   307 LGDDSFLERFNTHYDAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIE 371

  Fly   333 TFRNGTLFHRM------RHSDCFAGGLFVLGAAETQMK-HWEKYAHIGIGLTDTCHDSYWSSPTR 390
            |       |.|      :|:       |:..|..|..: ||.::.                    
  Rat   372 T-------HEMLYQVIKKHN-------FLPEAFTTDFRVHWAQHP-------------------- 402

  Fly   391 LGPDTFAFTEESQQEIEPLQRNYYNLRPEVAETYLVLWRITHHPQYRLWGLEMVQAIEKYCRMPY 455
                                     ||||.||:...|::.|..|.|...|..:::.:.||.|:|.
  Rat   403 -------------------------LRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPC 442

  Fly   456 GYTGVMDVNNVTSEPDDVQGSFFLGSTLKYLYLLFSD--DDVVSLEQWVFNSAGHFLPI------ 512
            |:..:.||.  |...:|...||||....|||||||:|  |.:..:|.::|.:..|.||:      
  Rat   443 GFAAMKDVR--TGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTN 505

  Fly   513 -----KGVNPMYRQHNSSN 526
                 |.....|.:.:.||
  Rat   506 RNISKKNTTSEYTELDDSN 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IcNP_733331.1 Glyco_hydro_47 78..512 CDD:279825 127/506 (25%)
Edem3XP_038946376.1 Glyco_hydro_47 60..499 CDD:396217 127/506 (25%)
PA_EDEM3_like 666..791 CDD:239041
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343600
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.