DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and GLR3.4

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001030971.1 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:978 Identity:208/978 - (21%)
Similarity:378/978 - (38%) Gaps:207/978 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 YDNYQSLESVPI--GLLTDQNTEQ-------MNIVFDHAIDVANQEVGTSLTSLKEEVNYGDAYQ 85
            ||::....:.|.  ..:.|.|.:|       :||:|                   ::.|......
plant    69 YDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIF-------------------QDSNCSGFIG 114

  Fly    86 SYGKLCRMLETGIAGVFGPSSRHTAVHLMS-ICDAMDIPHI---------------YSYMSENAE 134
            :.|.| :::|..:....||.|...| |::| :.:.:.:|.:               |...:...:
plant   115 TMGAL-QLMENKVVAAIGPQSSGIA-HMISYVANELHVPLLSFGATDPTLSSLQFPYFLRTTQND 177

  Fly   135 GFNLHPHPADLAKALYSLITEFNWTRFIFLYESAEY-LNILNELTTMLGKSGTVITVLRYDMQLN 198
            .|.:|        |:...::...|.:.|.::...|. .|.::.|..:|.|..:.|:   |...:.
plant   178 YFQMH--------AIADFLSYSGWRQVIAIFVDDECGRNGISVLGDVLAKKRSRIS---YKAAIT 231

  Fly   199 -GNYKQVLRRVRKSV---DNRIVVVG-SSETMPEFLNQAQQVGIINEDYKYI-----------IG 247
             |.....:|.:..||   ::|:.||. :.::.....:.|:.:|::...|.:|           :.
plant   232 PGADSSSIRDLLVSVNLMESRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTAMDSME 296

  Fly   248 NLDFHSFDLEEYKYSEANITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCPITVEMALTYDA 312
            ::|..:.||.:      .:...|.::.|....::.:.:.......|.|.:.:       ...||:
plant   297 HVDSDTMDLLQ------GVVAFRHYTIESSVKRQFMARWKNLRPNDGFNSYA-------MYAYDS 348

  Fly   313 VQLFAQTL-------KNLPFKPMPQNCSQRTE---------SVRDDGSSFKNYMRTLRLTDRLLT 361
            |.|.|:.|       .|:.|...|.  ..:|.         ||.::|..|...:..:..|.  :|
plant   349 VWLVARALDVFFRENNNITFSNDPN--LHKTNGSTIQLSALSVFNEGEKFMKIILGMNHTG--VT 409

  Fly   362 GPIYFEGN---VRKGYHLDVIELQPSGIVKVGTWDEDRQYRPQRLAPTTAQFDSVDNSLAN---K 420
            |||.|:.:   |...|  :|:.|:.:....||.|......  ..:.|.|......:.|.||   |
plant   410 GPIQFDSDRNRVNPAY--EVLNLEGTAPRTVGYWSNHSGL--SVVHPETLYSRPPNTSTANQRLK 470

  Fly   421 TFI--------------------ILLSVPNK-PYAQLVETYKQLEGNSQYEGYGVDLIKELADKL 464
            ..|                    :.:.|||: .|...|...|...|   ..||.:|:.:...:.|
plant   471 GIIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPG---VRGYCIDVFEAAIELL 532

  Fly   465 GFNF--TFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGI 527
            .:..  |::..|:  |..|.|.:   .::.|::....|:|:.|:||.:.|.:.:|||.||:..|:
plant   533 PYPVPRTYILYGD--GKRNPSYD---NLVNEVVADNFDVAVGDITIVTNRTRYVDFTQPFIESGL 592

  Fly   528 AILY-LKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEEL 591
            .::. :|..|::|  ::|:.||:.|:|...|..||.|....:||......|:..|      |.. 
plant   593 VVVAPVKEAKSSP--WSFLKPFTIEMWAVTGGFFLFVGAMVWILEHRFNQEFRGP------PRR- 648

  Fly   592 ENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSL 656
                .|....||:...:.....|....:|. |.|...|.|..||:.|||||:|.:.|||.:..|.
plant   649 ----QLITIFWFSFSTMFFSHRENTVSSLG-RFVLIIWLFVVLIINSSYTASLTSILTIRQLTSR 708

  Fly   657 INSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTE----DNMEGVNRV 717
            |..:|.|..:.:.:  |.:.....||:.:........::.....|. |||:.    .|..||..:
plant   709 IEGIDSLVTSNEPI--GVQDGTFARNYLINELNILPSRIVPLKDEE-QYLSALQRGPNAGGVAAI 770

  Fly   718 KTNTHYAFLMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLE 782
            .....|..::.:.|       .|..:.:|......|:|.|.::|.|.....:.|:|:|.|:|.||
plant   771 VDELPYIEVLLTNS-------NCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELE 828

  Fly   783 KMKNKWWNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHY 847
            |:..||.|....  |:.:....:.:.|.:.:..|:|  |:.|..|.:...:..|.:|     ..|
plant   829 KIHRKWLNYKHE--CSMQISNSEDSQLSLKSFWGLF--LICGITCFMALTVFFWRVF-----WQY 884

  Fly   848 RVPLRDALKEEFQFVI-------------DFNNYVRVL-KNSASI-------YSRSRQSSMSVAS 891
            :..|.::..||....:             .|...::|: |..|.|       .|:..:|:.|.|.
plant   885 QRLLPESADEERAGEVSEPSRSGRGSRAPSFKELIKVVDKREAEIKEILKQKSSKKLKSTQSAAG 949

  Fly   892 VAQ 894
            .:|
plant   950 TSQ 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 75/412 (18%)
ANF_receptor 51..382 CDD:279440 69/389 (18%)
PBP2_iGluR_Kainate 419..790 CDD:270432 102/401 (25%)
Lig_chan 551..824 CDD:278489 70/276 (25%)
GLR3.4NP_001030971.1 PBP1_GABAb_receptor_plant 62..450 CDD:380645 78/433 (18%)
Periplasmic_Binding_Protein_Type_2 <518..591 CDD:389745 21/77 (27%)
Lig_chan 615..869 CDD:365843 71/279 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.780

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