DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and grik1a

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_009303592.1 Gene:grik1a / 798001 ZFINID:ZDB-GENE-030131-6502 Length:919 Species:Danio rerio


Alignment Length:888 Identity:305/888 - (34%)
Similarity:466/888 - (52%) Gaps:95/888 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FVILWSLFSIHISVNWAQYENFGGYDNYQSLESVPIGLLTDQNTEQMNIVFDHAIDVANQE---- 66
            |...:|:...::|..  |....||.  :::.|:.|:.:  |:      :.|..|:...|:.    
Zfish    22 FFFFYSMAKFYLSEQ--QVIRIGGI--FETRENEPVSM--DE------LAFKFAVTSINRNRTLM 74

  Fly    67 VGTSLTSLKEEVNYGDAYQSYGKLCRMLETGIAGVFGPSSRHTAVHLMSICDAMDIPHIYSYMS- 130
            ..|:||...:.||..|::::..::|..|..|:|.|||||...:...:.|||:|:::|||.:... 
Zfish    75 PNTTLTYDIQRVNLFDSFEASRRVCDQLALGVAAVFGPSHSSSVSAVQSICNALEVPHIQTRWKH 139

  Fly   131 ---ENAEGF--NLHPHPADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSGTVITV 190
               :|.:.|  ||:|....:::|:..::..:.|.....:||.:..|..:.||.....|:...|.:
Zfish   140 PSVDNKDNFYINLYPEYTSISRAILDIVIFYKWKCVTVVYEDSTGLMRMQELIKAPSKNNLKIRI 204

  Fly   191 LRYDMQL---NGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDFH 252
                .||   .|:.:.:|:.::|..:..::...|.:...|.|.|...:|::.|.|.:....||..
Zfish   205 ----RQLPSGGGDSRPLLKEMKKEKEFYVIFDCSYQVAAELLKQLMSMGMMTEYYHFFFTTLDLF 265

  Fly   253 SFDLEEYKYSEANITGLRLFSPEKMAVKELLMK------LGYPTDQDEFRNGSCPITVEMALTYD 311
            :.|||.|:||..|:|..||.:.:...|..::.|      |..|..:....:|.  :|...||.||
Zfish   266 ALDLEPYRYSGVNMTAFRLLNLDDSYVASVIQKWSMERQLAPPKPESGLMSGI--MTTAAALMYD 328

  Fly   312 AVQLFAQTLKNLPFKPMPQNCSQRTESVRD--------DGSSFKNYMRTLR---LTDRLLTGPIY 365
            ||.:.|..         .|..:|.|.|...        .|..|.|..:..:   ||.|::...  
Zfish   329 AVFMVAVA---------SQRATQMTVSSLQCHRHKPWRYGPRFMNLFKEAQWDGLTGRIVLNK-- 382

  Fly   366 FEGNVRKGYHLDVIELQPSGI---------------VKVGTWDEDRQYRPQRLAPTTAQFDSVDN 415
             ...:||.::||:|.|:..|.               .|:|.|:   .|....|...... .::.:
Zfish   383 -TDGLRKEFNLDLISLKEDGTAKRVADGASRPNKLWTKIGVWN---SYTGLNLTEIKDN-KNITD 442

  Fly   416 SLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNF--TFVNGGNDYG 478
            ||||:|.|:...:.| ||....::.|.|.||.::|||.:||:|||::.|||.:  ..|..|. ||
Zfish   443 SLANRTLIVTTILEN-PYVMYKKSDKVLYGNDRFEGYCLDLLKELSNILGFTYEVKLVTDGK-YG 505

  Fly   479 SYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFT 543
            :.| ...|..||:||::...||||:..||||..||:.:||:.|||.|||:|||.||....|.:|:
Zfish   506 AQN-DKGEWNGMVRELIDHIADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFS 569

  Fly   544 FMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGAL 608
            |::|.:.::|.::..:.||||...|::.|.:|.||.||:||....|.:||.|||.||:||...||
Zfish   570 FLNPLTPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPSSEVVENNFTLLNSLWFGVAAL 634

  Fly   609 LQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYG 673
            ::||||:.|||||||.:...|||||||::||||||||||||:|:..|.|:|.|||| .:..:.||
Zfish   635 MRQGSELMPKALSTRILGGIWWFFTLIIISSYTANLAAFLTVERMDSPIDSADDLA-KQTRIEYG 698

  Fly   674 AKKTGSTRNFFMTSAEERYKKMNKFMSENPQ-YLTEDNMEGVNRVKTNTHYAFLMESTSIEYNTK 737
            |.:.|||..||..|....|:||..|||.... .|.:::.:|:.||.| |.||.|||||||||.|:
Zfish   699 AVRDGSTMTFFKKSKISTYEKMWAFMSSRKNTALVKNSKDGITRVLT-TDYALLMESTSIEYITQ 762

  Fly   738 RECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKED 802
            |.|||.::|..:|.||||:......|:|.|...|:|:|||:|.|..||.|||.  |.|  ..:||
Zfish   763 RNCNLTQVGGLIDSKGYGVGTPIGSPYRDKVTIAILQLQEEGKLHMMKEKWWR--GNG--CPEED 823

  Fly   803 APDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAH 845
            :.:|:.|.:.|:.|:|.||..|...::...|..::.    |:|
Zfish   824 SKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFIY----KSH 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 97/398 (24%)
ANF_receptor 51..382 CDD:279440 91/360 (25%)
PBP2_iGluR_Kainate 419..790 CDD:270432 179/373 (48%)
Lig_chan 551..824 CDD:278489 133/273 (49%)
grik1aXP_009303592.1 Periplasmic_Binding_Protein_Type_1 37..432 CDD:299141 103/425 (24%)
ANF_receptor 57..398 CDD:279440 91/364 (25%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 179/373 (48%)
Lig_chan 577..846 CDD:278489 133/274 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591292
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.660

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