DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and grik5l

DIOPT Version :10

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5l / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:441 Identity:148/441 - (33%)
Similarity:229/441 - (51%) Gaps:29/441 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 IILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTF--VNGGNDYGSYNKSTN 485
            :.:.::..:|::...|        |..||:.:||:.|||..||||:|.  |..|. ||:.::..|
 Frog    43 LTVTTIMEQPFSMKTE--------SGMEGFCIDLLSELAQSLGFNYTIKEVKDGR-YGAKDQDGN 98

  Fly   486 ESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQ-KATPELFTFMDPFS 549
            .: ||:.|::...||||:..||||..||:.|.||.|||..||:||..|.. .....||.|:.|||
 Frog    99 WN-GMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISILLRKDDVSENSYLFGFLTPFS 162

  Fly   550 EEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSE 614
            :|.|..:..:::..||..|::|||||.||       .|....:|.|...||:||..||...||:|
 Frog   163 KETWIGILVAYVVTSLCLFLVGRLSPCEW-------TELSTEQNNFNFLNSLWFGVGAFTLQGAE 220

  Fly   615 IGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSL-INSVDDLADNKDGVVYGAKKTG 678
            ..||::|.|.:|..||.|::::|::|.|:.||||..:..|:. |.:.:||. |:..:.:|...:.
 Frog   221 PHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTNIQTFEDLV-NQRTLEFGTINSS 284

  Fly   679 STRNFFMTSAEERYKKMNKFMSE-NPQYLTEDNMEGVNRVKTNTHYAFLMESTSIEYNTKRECNL 742
            ||..||..|....|:.:.::|.: ..:.|.:...|||.||| .::||||.||...:....:.|:|
 Frog   285 STFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVK-ESNYAFLGESVMQDIMVAKHCDL 348

  Fly   743 KKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKEDAPDAT 807
            .:....:..:|||||...|.|.....:.|:||..|.|.:|.::.|||:..    |..|..| ...
 Frog   349 VRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKWWDNT----CNMKRSA-GWN 408

  Fly   808 PLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEE 858
            |:..:.|.|:|.:|.:|....::..::..||.....|...:.....|..||
 Frog   409 PVQPHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQKKSCCSAFSEE 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605
PBP2_iGluR_Kainate 419..790 CDD:270432 132/371 (36%)
Lig_chan 551..824 CDD:459656 91/274 (33%)
grik5lNP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 132/371 (36%)
Blue background indicates that the domain is not in the aligned region.

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