DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Ir7f

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster


Alignment Length:440 Identity:84/440 - (19%)
Similarity:153/440 - (34%) Gaps:138/440 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 VKVGTWDEDRQYRPQRLAPTTAQFDSVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYEG 451
            :.|.|:| .|:::..::.|     |.:  |..:...:.:|:....|:.:||  :......|:..|
  Fly   201 IPVNTFD-GRKWKASQMFP-----DKL--SQMHGCPLTVLTWHQPPFVELV--WDPKHNRSRGSG 255

  Fly   452 YGVDLIKELADKLGFNFTFVN----GGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSER 512
            :.:.|::.||.::.|:...||    ..|   :|..:...|.|.:.:::....::::.....|:.|
  Fly   256 FEIQLVEHLARRMNFSLELVNIALLRPN---AYRLAEGSSEGPIEKLLQRNVNISMGYFRKTARR 317

  Fly   513 EQALDFTIPFMNLG-IAILYLKPQK-ATPELFTFMDPFSEEVWWFLGFSFL-------------- 561
            .|.|...:.:.:.. :|:|.|:..: .:..|..|  ||...||..|..:.|              
  Fly   318 NQLLTTPMSYYSANLVAVLQLERYRIGSLALLVF--PFELSVWMLLLLALLIHLGIHLPSARRGN 380

  Fly   562 ------GVSLSFFILG----RLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIG 616
                  |:.:...:||    || |..|             .::|...:.:|.:.           
  Fly   381 EEDGGGGLQVVALLLGAALARL-PRSW-------------RHRFIAAHWLWASI----------- 420

  Fly   617 PKALSTRTVASFWWFFTLIVVSSY-------------------TANLAAFLTIEKPQ-----SLI 657
            |..:|.:::     .|.||.:..|                   |||....| :|.||     ..|
  Fly   421 PLRISYQSL-----LFHLIRLQLYNTPSFSLDQLLAEGFQGICTANTQRLL-LEMPQLARDPDSI 479

  Fly   658 NSVDD---------LADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTEDNMEG 713
            .|||.         |..|::..::.......|.:|..:||                   ..|...
  Fly   480 QSVDTPFDWDVLNVLTRNRNRKIFAVANQDVTLSFLHSSA-------------------HPNAFH 525

  Fly   714 VNRVKTNTHYAFLMESTSIEYNTKRECNLKKIGD---ALDEKGYGIAMRK 760
            |.:...|..||.:       |..|.....:|:.|   .||..|:..|.|:
  Fly   526 VVKQPVNVEYAGM-------YMPKHSFLYEKMDDDIRRLDASGFIHAWRR 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 3/8 (38%)
ANF_receptor 51..382 CDD:279440
PBP2_iGluR_Kainate 419..790 CDD:270432 77/408 (19%)
Lig_chan 551..824 CDD:278489 50/270 (19%)
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 27/133 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462865
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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