DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and grin3a

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:845 Identity:185/845 - (21%)
Similarity:334/845 - (39%) Gaps:164/845 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 GIAGVFG-PSSRHTAVHLMSICDAMDIPHI------YSYMSENAEGFNL---HPHPADLAKALYS 151
            |::.:.. |.:|...|.|..|...:.||.|      :...::|...|.:   :|..:. |..::|
Zfish   197 GVSAIISFPQNRDELVKLEFIASTLQIPVISVVQSEFQRQTQNLLHFQMAMQNPQTSQ-ANLIFS 260

  Fly   152 LITEFNW-------------TRFIFLYESAEYLNILNELTTMLGKSGTVITVLRYDMQLNGNY-- 201
            |::..||             :.|:||..:....::           |||:.:.......|..:  
Zfish   261 LLSMNNWFDVSLVMCQQMNISDFVFLLHNNSKFHL-----------GTVLKISTNSSSKNDFHIF 314

  Fly   202 -KQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSEAN 265
             :..|..::.|....:........:........:.|:|..||.:|||:    |.::||.: :|..
Zfish   315 LQAQLESIKDSTSTLVTFGCDIRDIRRIFTTIAKFGLILPDYHWIIGD----SQNVEELR-TEGL 374

  Fly   266 ITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCPITVEMALTYDAVQLFAQTL-------KNL 323
            ..||....           ::|.|: .|.:             ..||::|.|:.:       ..|
Zfish   375 PMGLLAHG-----------RMGEPS-LDHY-------------VQDALELVARAVGSAATVSPQL 414

  Fly   324 PFKPMPQNCSQRTESVR-DDGSSFKNYMRTLRLTDRLLTG--PIYFEGNVRKGYHLDVIELQ--P 383
            ...|...||..|.|:.. ..|:....||.:.....  |:|  .:..|..:....|..:..||  |
Zfish   415 ALIPGTTNCLARLEAKNLTSGTFLSRYMASTSFDG--LSGCISVQEESTIISESHHFIWNLQHDP 477

  Fly   384 SG---------------IVKVGTWDEDRQYRP-------QRL---------APTTAQFDSVDNSL 417
            .|               ::..|.|...|:.:|       .||         .|.....|..|..|
Zfish   478 IGKPMWTRLGSWKHGKVVMDYGVWPNKRRSQPGADWRHSSRLHLRVVTLVEHPFVFTRDVDDEGL 542

  Fly   418 ANKTFIILLSVPNKPYAQLVETYKQLEGNSQ----------YEGYGVDLIKELADKLGFNF-TFV 471
            .....:.|..:.|.. |.|...::.|:|.:.          | ||.:||:::||:.:||:| .::
Zfish   543 CPAGQLCLDPLTNDT-ALLESLFQGLQGANDTVPLEFKKCCY-GYCIDLLEKLAEDMGFDFDLYI 605

  Fly   472 NGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQK 536
            .|...||:|  .....||::.::|:|.|.||:|..:|.|.|.|.:|||.||.:..:.||......
Zfish   606 VGDGKYGAY--KNGRWTGLVGDLMSGAAHLAVTSFSINSARSQVIDFTSPFFSTSLGILVRTRDT 668

  Fly   537 ATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILG-RLSPSEWDNPYPCIEEPEELENQFTLGNS 600
            |.| :..||.|....:|       ||:.:|..:.. .|:..||.:|:.........:..|:..::
Zfish   669 AAP-IGAFMWPLHWSMW-------LGIFVSLHVTAVFLTLYEWKSPFGMTPRGRNRDRVFSFSSA 725

  Fly   601 IWFTTGALLQQGSEI-GPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDD-- 662
            :......|..:.:.| .||..:.|.:.:.|..|.|..:|:|||||||.:..||....::.:.|  
Zfish   726 LNVCYAILFGRTAAIKPPKCWTGRFLMNLWAIFCLFCLSTYTANLAAVMVGEKTYEQLSGIHDPK 790

  Fly   663 LADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTHY--AF 725
            |.....|..:|..:..|..::...|..|.::.|.:       |......:|::.:|.:...  ||
Zfish   791 LHHPSQGFRFGTVRESSAEDYVKKSFPEMHEYMRR-------YNAPTTPDGIDHLKDDPQKLDAF 848

  Fly   726 LMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWN 790
            :|:...::|    ..:..| ..:|...||||.::::.|.....:..:.:.:..|.::.:.:||:.
Zfish   849 IMDKALLDY----WAHADKXYISLLLTGYGIGLKQNSPLTSNISELVSQYKSDGFMDMLHDKWYK 909

  Fly   791 EVGTGICATKEDAPDAT-PLDMNNLEGVFFVLLVGSCCALL-----YGIISWVLFVMKKA--HHY 847
            .|.   |..:..|...| .:.:.:..|:|.:|.||...:||     :.:..||:..|:::  |.|
Zfish   910 VVP---CGKRSFAVTETLQMGIKHFSGLFVMLCVGVALSLLTTLGEHIVHRWVIPRMQESTEHKY 971

  Fly   848  847
            Zfish   972  971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 65/351 (19%)
ANF_receptor 51..382 CDD:279440 59/320 (18%)
PBP2_iGluR_Kainate 419..790 CDD:270432 96/387 (25%)
Lig_chan 551..824 CDD:278489 59/279 (21%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 64/348 (18%)
ANF_receptor 132..452 CDD:279440 56/298 (19%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 101/412 (25%)
Lig_chan 682..941 CDD:278489 59/279 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591315
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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