DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and LOC4576285

DIOPT Version :10

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_061502502.1 Gene:LOC4576285 / 4576285 VectorBaseID:AGAMI1_009844 Length:456 Species:Anopheles gambiae


Alignment Length:429 Identity:111/429 - (25%)
Similarity:177/429 - (41%) Gaps:89/429 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 GVFGPSSRHTAVHLMSICDAMDIPHIYSYMSEN----AEGF-----NLHPHPADLAKALYSLITE 155
            |...|.|..| :|..|  :...:|.:..:..|.    :.||     ::.|   |..:|:...:..
Mosquito     3 GAVSPDSFDT-LHPYS--NTFQMPFVTPWFPEKVLTPSSGFLDFAISMRP---DHYQAIIDTVRY 61

  Fly   156 FNWTRFIFLYESAEYLNILN---------------ELTTMLGKSGTVITVLRYDMQLNGNYKQVL 205
            :.|.|.|::|:|.:.|..|.               |....:......|..||...:||       
Mosquito    62 YGWDRIIYMYDSHDGLLRLQQIYQGLRPGNETFHVETVKRIANVSDAIEFLRTIEELN------- 119

  Fly   206 RRVRKSVDNRIVVVGSSETMPEF-LNQAQQVGIINEDYKYIIGNLDFHS-FDLEEYKYSEANITG 268
            |..||    .||:..|:|...:. ::..:.:.:....|.|::..|.... ::.|..:|...||||
Mosquito   120 RWSRK----HIVLDCSTELAKDIVVSHVRDITLGKRTYHYLLSGLVMDDRWESEVIEYGAINITG 180

  Fly   269 LRLFSPEKMAVKELL---MKLGYPTDQDEFRNGSCPITVEMALTYDAV----------------Q 314
            .|:....|..|||.|   .:|...|.|..   |...|:.:.||.||||                |
Mosquito   181 FRIVDTSKKYVKEFLDGWKRLDPTTSQGA---GKELISAQAALMYDAVFVLVEAFSKIMRKKPDQ 242

  Fly   315 LFAQTLKN--LPF-------KPMPQNCSQRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYF-EGN 369
            ..|.|::|  .||       :.:..|.|:...:..:.|.....|:|.:.::.  |||.|.| |..
Mosquito   243 FRAYTMRNRGQPFNLPANGTRTLDCNTSKGWVTPWEHGDKISRYLRKVEISG--LTGDIRFNEDG 305

  Fly   370 VRKGYHLDVIELQ-PSGIVKVGTWDEDRQYRPQRLAPTTAQFDSVDNSL---ANKTFIILLSVPN 430
            .|:.|.|.|:|:. .|.:|||..|.::     ..|||..|::..:...:   .|||:|: .::..
Mosquito   306 KRQNYTLHVVEMTVNSAMVKVAEWSDE-----GGLAPVVAKYTRLKTDMHYERNKTYIV-TTIIE 364

  Fly   431 KPYAQL--VETYKQLEGNSQYEGYGVDLIKELADKLGFN 467
            :||..|  .|..:.||.|.::|||..||.:.:|.|||.|
Mosquito   365 EPYIMLRQPEPGETLETNERFEGYCKDLAELVAKKLGIN 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605 86/357 (24%)
PBP2_iGluR_Kainate 419..790 CDD:270432 21/51 (41%)
Lig_chan 551..824 CDD:459656
LOC4576285XP_061502502.1 None
Blue background indicates that the domain is not in the aligned region.

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