DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Ir85a

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster


Alignment Length:589 Identity:110/589 - (18%)
Similarity:206/589 - (34%) Gaps:141/589 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 SQRT--ESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEGNVRKGYHLDVIELQPSGI--------- 386
            :|.|  |:|:|||......|.|..::..|....|..:...:...|:.::......:         
  Fly    79 NQNTPLEAVKDDGILMYMVMITTNISQPLELSLIRKKSAAKHRSHVFLLVRDADTVSDAWMRASF 143

  Fly   387 ----------VKVGTWDEDR----QYRP---QRLAPTTAQFDSVDNSLANKTFIILLSVPN---K 431
                      :.:..|.:.|    :|.|   ..|.|.    |:..|.:.....:...::||   |
  Fly   144 RQFWKIWLLNIVILYWRDGRLNAYRYNPFMDNYLIPV----DNKPNEVPTLEQLFPKTIPNMQRK 204

  Fly   432 PYAQLVETYK-QLEGNSQYEG--YGVD--LIKELADKLGFNFT-FVNGGNDYGSYNKSTNESTGM 490
            |....:  || .:......:|  .|.|  |...:|::|  |.| .:...:.|.::|.|   |...
  Fly   205 PLRMCI--YKDDVRAIFWRQGTILGTDGLLAAYVAERL--NATMMITRPHSYNNHNLS---SDIC 262

  Fly   491 LREIMTGRADLA--ITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVW 553
            ..|:.....|:|  |..|...:.|:|| :.|:......:.::..| .|..|..:.....|...||
  Fly   263 FLEVAKEYVDVAMNIRFLVPDTFRKQA-ESTVSHTRDDLCVIVPK-AKTAPTFWNIFRSFGSLVW 325

  Fly   554 WFLGFSFLGVSLSFFIL----GRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSE 614
            ..:..|.|..::..:||    ||:              |.:|            ..|||....::
  Fly   326 ALILVSVLVANVFCYILKSEVGRV--------------PMQL------------FAGALTMPMTQ 364

  Fly   615 IGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGS 679
            |.|.. |.|....||.:|.|::.|::..||.:.:..:.....||.:..||.:...::...:....
  Fly   365 IPPNH-SIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKH 428

  Fly   680 TRNFFMT--SAEERYKKMNKFMSENPQYLTEDNME---------GVNRVKTNTHYAF-------- 725
            .::|...  ..|.|.::....:|:...|....|.:         .:.|.:.|:....        
  Fly   429 IQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEKYHIARFQVNSRVHMHLGRPLFH 493

  Fly   726 LMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWN 790
            ||.|..:.::            |:....||.      |:.|..::.:....|.|.     .::|:
  Fly   494 LMNSCLVPFH------------AVYIVPYGS------PYLGFLDSLIRSSHEFGF-----ERYWD 535

  Fly   791 EV--------GTGICATKEDAPDATP--LDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAH 845
            .:        |..:...:..:.:..|  |.:.:...||.:.|||...|.:  :::|    ....|
  Fly   536 RIMNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVGIGMACI--VLAW----EHLTH 594

  Fly   846 HYRV 849
            :|.:
  Fly   595 NYNL 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 13/83 (16%)
ANF_receptor 51..382 CDD:279440 12/50 (24%)
PBP2_iGluR_Kainate 419..790 CDD:270432 77/404 (19%)
Lig_chan 551..824 CDD:278489 53/305 (17%)
Ir85aNP_649833.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462849
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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