DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Ir75d

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster


Alignment Length:447 Identity:91/447 - (20%)
Similarity:171/447 - (38%) Gaps:103/447 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 LIKELADKLGFNFTFVNGGNDYGSYNKSTNESTGMLREIMTGR-----ADLAITDLTITSEREQA 515
            |:.|||::|..::      |.|.:.|....:..|....:| ||     .|||...:.:..:|...
  Fly   296 LMLELANRLNMSY------NTYQTVNYGWRQPNGSFDGLM-GRFQRYELDLAQLAIFMRLDRIAL 353

  Fly   516 LDFTIPFMNLGIAILYLKPQ-KATPELFTFMDPFSEEVW----WFLGFSFLGVSLSFFILGRLSP 575
            :||......:...|::.:|. .|...:|..  ||..:||    ..|..:.:.:.|..|    .||
  Fly   354 VDFVAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELF----FSP 412

  Fly   576 SEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSY 640
            ...|..|           ..|| |.:|   ||:.|||..:..:..|.|.:....:...|.:.:|:
  Fly   413 HNHDMSY-----------MDTL-NFVW---GAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSF 462

  Fly   641 TANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKM-NKFMSENPQ 704
            :||:.|.|  :.|...|.|:.||..:.  :..|.:.|...:.:|..|.:...|.: :|.::...:
  Fly   463 SANIVALL--QSPSDAIQSLSDLGQSP--LEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGE 523

  Fly   705 YLTEDNMEGVNRVKTNTHYAFLME------STSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWP 763
            .:....:.|:.:::|.. :|:.:|      ..|..::...:|.|.:: :........|..||::|
  Fly   524 NIYMRPLLGMEKMRTGL-FAYQVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFP 586

  Fly   764 HRGKFNNALLELQEQGVLEKMKNKWWNE-----------VGTGICATKEDAPDATPLDMNNLEGV 817
            ::......|...:|..::.:.:.||..:           |..||...:                 
  Fly   587 YKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECR----------------- 634

  Fly   818 FFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFVI-DFNNYVRVLK 873
             :.|.:..|.|    .:|:|||:                  |:|:. .|....|::|
  Fly   635 -YALGIFGCGA----AVSFVLFL------------------FEFIFRHFKQVYRIIK 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377
ANF_receptor 51..382 CDD:279440
PBP2_iGluR_Kainate 419..790 CDD:270432 76/350 (22%)
Lig_chan 551..824 CDD:278489 56/294 (19%)
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 52/213 (24%)
Lig_chan 388..644 CDD:278489 57/298 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462826
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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