DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Ir75d

DIOPT Version :10

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster


Alignment Length:447 Identity:91/447 - (20%)
Similarity:171/447 - (38%) Gaps:103/447 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 LIKELADKLGFNFTFVNGGNDYGSYNKSTNESTGMLREIMTGR-----ADLAITDLTITSEREQA 515
            |:.|||::|..::      |.|.:.|....:..|....:| ||     .|||...:.:..:|...
  Fly   296 LMLELANRLNMSY------NTYQTVNYGWRQPNGSFDGLM-GRFQRYELDLAQLAIFMRLDRIAL 353

  Fly   516 LDFTIPFMNLGIAILYLKPQ-KATPELFTFMDPFSEEVW----WFLGFSFLGVSLSFFILGRLSP 575
            :||......:...|::.:|. .|...:|..  ||..:||    ..|..:.:.:.|..|    .||
  Fly   354 VDFVAETYRVRAGIMFRQPPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELF----FSP 412

  Fly   576 SEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSY 640
            ...|..|           ..|| |.:|   ||:.|||..:..:..|.|.:....:...|.:.:|:
  Fly   413 HNHDMSY-----------MDTL-NFVW---GAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSF 462

  Fly   641 TANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKM-NKFMSENPQ 704
            :||:.|.|  :.|...|.|:.||..:.  :..|.:.|...:.:|..|.:...|.: :|.::...:
  Fly   463 SANIVALL--QSPSDAIQSLSDLGQSP--LEIGVQDTQYNKIYFTESTDPVTKNLYHKKIASKGE 523

  Fly   705 YLTEDNMEGVNRVKTNTHYAFLME------STSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWP 763
            .:....:.|:.:::|.. :|:.:|      ..|..::...:|.|.:: :........|..||::|
  Fly   524 NIYMRPLLGMEKMRTGL-FAYQVELQAGYQIVSDTFSEPEKCGLMEL-EPFQLPMLAIPTRKNFP 586

  Fly   764 HRGKFNNALLELQEQGVLEKMKNKWWNE-----------VGTGICATKEDAPDATPLDMNNLEGV 817
            ::......|...:|..::.:.:.||..:           |..||...:                 
  Fly   587 YKELIRRQLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECR----------------- 634

  Fly   818 FFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFVI-DFNNYVRVLK 873
             :.|.:..|.|    .:|:|||:                  |:|:. .|....|::|
  Fly   635 -YALGIFGCGA----AVSFVLFL------------------FEFIFRHFKQVYRIIK 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605
PBP2_iGluR_Kainate 419..790 CDD:270432 76/350 (22%)
Lig_chan 551..824 CDD:459656 56/294 (19%)
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>372 CDD:473866 18/79 (23%)
Lig_chan 386..643 CDD:459656 56/299 (19%)
Blue background indicates that the domain is not in the aligned region.

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