DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Gria4

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001106655.1 Gene:Gria4 / 29629 RGDID:61863 Length:902 Species:Rattus norvegicus


Alignment Length:861 Identity:294/861 - (34%)
Similarity:459/861 - (53%) Gaps:58/861 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SVPIGLLTDQNTEQMNIVFDHAIDVAN-----QEVGTSLTSLKEEVNYGDAYQSYGKLCRMLETG 97
            ||.||.|..:||:|....|..||.:.|     .|...:|....:.:...:::......|.....|
  Rat    26 SVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRG 90

  Fly    98 IAGVFGPSSRHTAVHLMSICDAMDIPHIY-SYMSENAEGFNLHPHPADLAKALYSLITEFNWTRF 161
            :..:||...:.:...|.|.|.|:.|..|. |:.:|....|.|...|: |..||.||:..:.|..|
  Rat    91 VFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPS-LRGALLSLLDHYEWNCF 154

  Fly   162 IFLYESAEYLNILNELTTMLGKSGTVITVLRYDMQLNGNYKQVLRRVRKSVDNRIVVVGSSETMP 226
            :|||::....:||..:....|::|..::.:..:...:.:|:|:|..:.:..:.:.|:....|.:.
  Rat   155 VFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQ 219

  Fly   227 EFLNQAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSEANITGLRLFSPEKMAVKELL---MKLGY 288
            ..|.|...||...:.|.|||.||.|....||.:.:..||:||.:|.......|.:|:   .||  
  Rat   220 NILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKL-- 282

  Fly   289 PTDQDEFRNGSCPITVEMALTYDAVQLFAQTLKNLPFKPM-------PQNCSQRTESVRDDGSSF 346
              ||.|:.....|.....|||||.|.:.|:|.::|..:.:       ..:|.....:....|...
  Rat   283 --DQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDM 345

  Fly   347 KNYMRTLRLTDRLLTGPIYFEGNVRK-GYHLDVIELQPSGIVKVGTW-DEDRQYRPQRLAPTTAQ 409
            :..::.:|:..  |||.:.|:...|: .|.:||.||:.:|..|||.| |.|:....|.: ||...
  Rat   346 ERTLKQVRIQG--LTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDM-PTLGN 407

  Fly   410 FDSVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLG--FNFTFVN 472
             |:.  ::.|:| :::.::...||....:.::..|||.:||||.|||..|:|..:|  :....|.
  Rat   408 -DTA--AIENRT-VVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVP 468

  Fly   473 GGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKA 537
            .|. ||:.:..|....||:.|::.|:|::||..||||..||:.:||:.|||:|||:|:..||||:
  Rat   469 DGK-YGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 532

  Fly   538 TPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELE--------NQ 594
            .|.:|:|:||.:.|:|..:.|:::|||:..|::.|.||.||..     ||||:.:        |:
  Rat   533 KPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHT-----EEPEDGKEGPSDQPPNE 592

  Fly   595 FTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINS 659
            |.:.||:||:.||.:|||.:|.|::||.|.|...|||||||::||||||||||||:|:..|.|.|
  Rat   593 FGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES 657

  Fly   660 VDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFM-SENPQYLTEDNMEGVNRV-KTNTH 722
            .:|||...: :.||...:|||:.||..|....|:||..:| |..|...|....|||.|| |:...
  Rat   658 AEDLAKQTE-IAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGK 721

  Fly   723 YAFLMESTSIEYNTKRE-CNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKN 786
            :|||:|||..||..:|: |:..|:|..||.||||:|..|....|...|.|:|:|.|||:|:|:||
  Rat   722 FAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRNAVNLAVLKLNEQGLLDKLKN 786

  Fly   787 KWW---NEVGTGICATKEDAPDAT-PLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHY 847
            |||   .|.|:|    ..|:.|.| .|.::|:.|||::|:.|...|:|..:|.:......:|...
  Rat   787 KWWYDKGECGSG----GGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRM 847

  Fly   848 RVPLRDALKEEFQFVI 863
            ::...:|::.:.:..|
  Rat   848 KLTFSEAIRNKARLSI 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 99/371 (27%)
ANF_receptor 51..382 CDD:279440 88/347 (25%)
PBP2_iGluR_Kainate 419..790 CDD:270432 168/386 (44%)
Lig_chan 551..824 CDD:278489 127/287 (44%)
Gria4NP_001106655.1 PBP1_iGluR_AMPA_GluR4 28..398 CDD:107383 101/376 (27%)
ANF_receptor 39..380 CDD:279440 88/347 (25%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 168/388 (43%)
Lig_chan 546..825 CDD:278489 127/288 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349878
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.750

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