DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Ir41a

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster


Alignment Length:713 Identity:129/713 - (18%)
Similarity:230/713 - (32%) Gaps:232/713 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 DMQLNGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDFH----SF 254
            |..:|...|..:..:.:|:.|:.|....:...||..|.      ..||...|:..:..|    ||
  Fly   105 DRFVNAFNKASVYSIWRSLHNKFVFAHIANESPESRNH------FFEDQPNILFVVRDHSSASSF 163

  Fly   255 DLEEYKYSEANITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCPITVEMALTYDAVQLFAQT 319
            |::..|:     .|.:..:|.:|.:.:     .|...:..|:.|.              .|||..
  Fly   164 DIKTNKF-----VGRKAENPSQMILVD-----RYLASEQRFQFGK--------------SLFADK 204

  Fly   320 LKNL-------------PFKPMPQNCSQRTESVRDDG-SSFKNYMRTLRLTDRLLTGPIYFEGNV 370
            |.||             |:..:..|.|...:.:...| |.|||               :|.:|..
  Fly   205 LNNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFKN---------------VYIDGTE 254

  Fly   371 RKGYHLDVIELQPSGIVKVGTWDEDRQYRPQRLAPTTAQFDSVDNSLANKTFIILLSVPNKPYAQ 435
            .: ..|:..|                |:.      .|.|.||                       
  Fly   255 TR-IVLNFCE----------------QFN------CTIQIDS----------------------- 273

  Fly   436 LVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTFVNGGNDYGSY--NKSTNESTGMLREIMTGR 498
                                                :..||:|..  |.|.:.:.|||   :..:
  Fly   274 ------------------------------------SAANDWGKVYPNMSGDGALGML---INRK 299

  Fly   499 ADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVW----WFLGFS 559
            ||:.|..:....|....||.::..:..||..|...|.:.| ..:..::||.|.:|    ..|...
  Fly   300 ADICIGAMYSWYEDYTYLDLSMYLVRSGITCLVPAPLRLT-SWYLPLEPFKETLWAAILLCLCAE 363

  Fly   560 FLGVSLSF------FILGRLSPSEWDNPYPCIEEPEELENQFTLGN-SIWFTTGALLQQGSEIGP 617
            ..|:.|::      ::|                 |...|..:|..: .:..|....:.|......
  Fly   364 ATGLVLAYKSEQALYVL-----------------PGYREGWWTCTSFGVCTTFKLFISQSGNSKA 411

  Fly   618 KALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRN 682
            .:|:.|.:....:...||:.|.|...||:.|||.       |:|:.||....:.:...:..:...
  Fly   412 YSLTVRVLLFACFLNDLIITSIYGGGLASILTIP-------SMDEAADTVTRLRFHRLQWAANSE 469

  Fly   683 FFMTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTH--YAFLMESTSIEYNTKRECNLKKI 745
            .::::.....:.:.|.:..|....::|.:   .|:..:.|  ..|.:|.....:..        |
  Fly   470 AWVSAIRASDEALVKDILYNFHIYSDDEL---LRLAQDQHMRIGFTVERLPFGHFA--------I 523

  Fly   746 GD-----ALDEKGYGIAMRKD-------------WPHRGKFNNALLELQEQG---------VLEK 783
            |:     |:|:.   :.|:.|             ||...|.|..:......|         |.:.
  Fly   524 GNYLGPQAIDQL---VIMKDDIYFQYTVAFVPRLWPLLDKLNTLIYSWHSSGFDKYWEYRVVADN 585

  Fly   784 MKNKWWNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVL-FVMKKAH 845
            :..|...:|...:..||:..|  .||.|:|..|...|.::||..|.|..::...| :::|:::
  Fly   586 LNLKIQQQVQETMTGTKDIGP--VPLGMSNFAGFIIVWILGSAIATLTFLLELSLTYILKQSN 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 41/219 (19%)
ANF_receptor 51..382 CDD:279440 41/205 (20%)
PBP2_iGluR_Kainate 419..790 CDD:270432 67/412 (16%)
Lig_chan 551..824 CDD:278489 55/312 (18%)
Ir41aNP_995744.4 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462850
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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