DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and W02A2.5

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_502564.2 Gene:W02A2.5 / 189098 WormBaseID:WBGene00012190 Length:487 Species:Caenorhabditis elegans


Alignment Length:481 Identity:99/481 - (20%)
Similarity:183/481 - (38%) Gaps:97/481 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 YEGYGVDLIKELADKLGFNF------TFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLT 507
            :.|:.::::|.:.|.|.:..      |.| ||.|:|:..|:...| |:|..:..|.||.......
 Worm    36 FPGWTMEVLKMITDSLKWEIIPVVTPTIV-GGLDWGTLQKNGTWS-GVLGYLQNGTADAVALMYQ 98

  Fly   508 ITSEREQALDFTIPFMNL-GIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFL---------- 561
            .|..|.:..:::.|..|: .:.:...|.:.....|:....|||.|||..|..|.:          
 Worm    99 KTDTRNEYFEYSYPVTNVQPVFVARKKTETLGSVLWNAFKPFSVEVWLCLLASLVLNLLIMIAIS 163

  Fly   562 GVSLSFFILGRLSPSE--WDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRT 624
            |:........|..|.|  |......::|..:....:||..:|.....||||.|            
 Worm   164 GIEFKLLFRSRFRPWEMLWHVVQLQLDEKSDDMLFYTLSGNIVLFVFALLQSG------------ 216

  Fly   625 VASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNF------ 683
                      |::..|...|...|......:...:.|::..     :.|.||...|.|:      
 Worm   217 ----------ILIEVYKGMLLTALITSNGDNPFANADEMIK-----LIGEKKYHLTTNYMGNWYF 266

  Fly   684 --FMTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTH-YAFLMESTSIEYNTKRECNLKKI 745
              ...|.::.:..:....:.||..........::.|.:..: |....:|.:::. :|..||...:
 Worm   267 DDLQHSDQQHFVSLRAATASNPVIPAASVSAALDLVDSGKYIYPIQQDSLAMQM-SKERCNYVYV 330

  Fly   746 GDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGI-----C-ATKEDAP 804
            .|.:.:........|::....:||..:  :..|..:::..||::|| |..:     | .|:..|.
 Worm   331 SDGMPQVSSFFVFTKNFSGIAEFNTQI--IMNQAFIQRTFNKYFNE-GFKLGFIPKCEVTEPTAS 392

  Fly   805 DAT-PLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFVIDFNNY 868
            ||| |||:.::.|||.:..:|...:|:       :||.:..|::                    :
 Worm   393 DATKPLDIESVIGVFTIGALGVAASLM-------VFVFEIYHYW--------------------H 430

  Fly   869 VRVLKNSASIYSRSRQSSMSVASVAQ 894
            ||:|...|.:  |...:..::|.:||
 Worm   431 VRILARRARM--RDPWNVRNLARIAQ 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377
ANF_receptor 51..382 CDD:279440
PBP2_iGluR_Kainate 419..790 CDD:270432 71/368 (19%)
Lig_chan 551..824 CDD:278489 60/300 (20%)
W02A2.5NP_502564.2 Lig_chan-Glu_bd <36..86 CDD:214911 14/51 (27%)
Periplasmic_Binding_Protein_Type_2 <74..>124 CDD:304360 11/50 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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