DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and T25E4.2

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001364710.1 Gene:T25E4.2 / 188897 WormBaseID:WBGene00020804 Length:455 Species:Caenorhabditis elegans


Alignment Length:443 Identity:80/443 - (18%)
Similarity:161/443 - (36%) Gaps:108/443 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   464 LGFNFTFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIP--FMNLG 526
            |...|..:|........:....:|..|   :..|.||:.:.....|.:|.:.:|||.|  |:..|
 Worm    41 LNMTFQLMNSTATIVQIDADIEQSIDM---VSNGSADITLVSARQTLDRMKKVDFTTPIGFVYYG 102

  Fly   527 IAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSF-FILGRL-------------SPSE 577
            ..:      :..|||     ..::.:.....:..|.:.:|| .|:|.|             |..:
 Worm   103 YLV------REIPEL-----AVADYIMRLFDYDTLAILISFGLIIGALLYLYTWIFGLRVRSLLD 156

  Fly   578 WDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTA 642
            |                      ::.:...::.|........:....:..||....|::::.|.|
 Worm   157 W----------------------MFISCSGIIHQFMFRISSPICALVLIGFWLLCCLVIITYYEA 199

  Fly   643 NLAAFLTIEKPQ-SLINSVD---DLADNKDGVVYGAKKTGSTRNFFMTSAE----ERYKKMNKFM 699
            .|.:||.:...: ::.|::|   :.|::| |.....::.|.|...:...::    :|.|....|:
 Worm   200 KLKSFLLLSHHRGTIFNTLDGVLEAAEHK-GWTLVIQERGYTPYLYCNPSQCARLDRLKSRINFI 263

  Fly   700 SENPQ---YLTEDNMEGVNRVKTNTHYAFLMES--TSIEYNTKRECNLKKIGDALDEKGY-GIAM 758
            ..:..   .|.:|...|.:.:.::     |.|:  |..:|::|    :..:.|.:....| ..|:
 Worm   264 GADDDANLLLGQDKHVGFSALASD-----LAETDITYFDYHSK----ILFVRDKIMAPEYLAYAV 319

  Fly   759 RKDWPH-RGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKEDA--PDATPLDMNN-----LE 815
            .|:... |.|||.|:.               :.:.|.|...::..|  |....:...:     |:
 Worm   320 NKNVKGLREKFNRAVA---------------YTKSGYGTVRSRYIASFPSYNSVTSQSQTITVLQ 369

  Fly   816 GVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFVIDFNNY 868
            ...|:.|. ..|.:.|| |:.::|:::...|       .:.:.|.|.....||
 Worm   370 TSHFIQLY-KFCFIFYG-IAIIVFILEIIFH-------RMTKNFTFFGHSYNY 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377
ANF_receptor 51..382 CDD:279440
PBP2_iGluR_Kainate 419..790 CDD:270432 63/356 (18%)
Lig_chan 551..824 CDD:278489 51/308 (17%)
T25E4.2NP_001364710.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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