DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and Grin3b

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:829 Identity:187/829 - (22%)
Similarity:310/829 - (37%) Gaps:187/829 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 PADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSGTVITVLR------------YD 194
            ||.||:.|..::........|...|:...|.:|..|..  .....|::|||            :.
Mouse   164 PASLARGLCQVLAPPGVVASITFPEARPELRLLQFLAA--ATETPVLSVLRREVRAPLGAPTPFH 226

  Fly   195 MQLN---------------------GNYKQVLRRVRKSVDNRIVVVGSSET--MPEFLNQAQQVG 236
            :||:                     .:...||.|||.  .:.:|.:.:|..  .|:|:....|:.
Mouse   227 LQLDWASPLETILDVLVSLVRAHAWEDIALVLCRVRD--PSGLVTLWTSRASQAPKFVLDLSQLD 289

  Fly   237 IINEDYK---YIIGNLD----------------FHSFD-LEEYKYSEANITGLRLFSPEKMAVKE 281
            ..|:..:   .::|.|:                .|:.: ||........:.|..|       ..|
Mouse   290 SGNDSLRATLALLGTLEGGGTPVSAAVLLGCSTAHAHEVLEAAPPGPQWLLGTPL-------PAE 347

  Fly   282 LLMKLGYP--------TDQDEFRNGSCPITVEMALTYDAVQLFAQTLKNLPFK-------PMPQN 331
            .|.|.|.|        |.|....          |..:|.|:|.|:.|.::...       |...|
Mouse   348 ALPKTGLPPGVLVLGETGQPSLE----------AAVHDMVELVARALSSMALMHPERALLPAAVN 402

  Fly   332 CSQRTESVRDDGSSFKNYMRTLRLTDRLL--------TGPIYFEGN--VRKGYHLDVIELQ--PS 384
            |    |.::..||.     .|.|...|.|        ||.::..|:  |....|..|..|:  |.
Mouse   403 C----EDLKTGGSE-----STARTLARFLSNTSFQGRTGAVWVAGSSQVHVSRHFKVWSLRRDPL 458

  Fly   385 GI---VKVGTWDEDR------------------QYRPQRLAPT--------TAQFDSVDNSLANK 420
            |.   ..||:|.:.:                  |.||:....|        |.:.|......|.:
Mouse   459 GAPAWATVGSWQDGQLDFQPGAA
ALRVPSPSGTQARPKLRVVTLVEHPFVFTRESDEDGQCPAGQ 523

  Fly   421 TFIILLSVPNKPYAQLVETYKQLEGNSQYE-------GYGVDLIKELADKLGFNF-TFVNGGNDY 477
               :.|.......|:|...:..||..|...       ||.:||::.||:.|.|:| .::.|...|
Mouse   524 ---LCLDPGTNDSARLDALFTALENGSVPRTLRRCCYGYCIDLLERLAEDLAFDFELYIVGDGKY 585

  Fly   478 GSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELF 542
            |:..  ....||::.:::.|||.:|:|..:|.|.|.|.:|||.||.:..:.|:......|:| :.
Mouse   586 GALR--DGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRDTASP-IG 647

  Fly   543 TFMDPFSEEVWWFLG-FSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTG 606
            .||.|....:|  :| |:.|.::..|..|     .||.:||............|:..:::.....
Mouse   648 AFMWPLHWSMW--VGVFAALHLTALFLTL-----YEWRSPYGLTPRGRNRGTVFSYSSALNLCYA 705

  Fly   607 ALL-QQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDD--LADNKD 668
            .|. :..|...||..:.|.:.:.|..|.|:|:|||||||||.:..:|....::.:.|  |.....
Mouse   706 ILFGRTVSSKTPKCPTGRFLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPSQ 770

  Fly   669 GVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQY----LTEDNMEGVNRVKTNTHYAFLMES 729
            |..:|.....|...:...|..|.:..|.:..:....:    ||.|      ..|.|   ||:|:.
Mouse   771 GFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSD------PPKLN---AFIMDK 826

  Fly   730 TSIEYNTK--RECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEV 792
            :.::|...  .:|.|..:|.....:||||.:.::.|.....:..:...:..|.::.:.:||:..|
Mouse   827 SLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMV 891

  Fly   793 --GTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLF 839
              |..:.|..|    ...:.:.:|.|:|.:|.:|...|||..:...|.:
Mouse   892 PCGKRVFAVTE----TLQMGVYHLSGLFVLLCLGLGSALLTSLGEHVFY 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 69/338 (20%)
ANF_receptor 51..382 CDD:279440 63/319 (20%)
PBP2_iGluR_Kainate 419..790 CDD:270432 98/388 (25%)
Lig_chan 551..824 CDD:278489 66/284 (23%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 69/346 (20%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 103/415 (25%)
Lig_chan 656..922 CDD:365843 66/285 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846400
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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