DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and gria2a

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:882 Identity:280/882 - (31%)
Similarity:444/882 - (50%) Gaps:104/882 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SVPIGLLTDQNTEQMNIVFDHAIDVANQEVGTS---LTSLKEEVNYGDAYQSYGKLCRMLETGIA 99
            ||.||.|..:..:|....|    .:...:.||:   ||...:.:...:::......|.....|:.
Zfish    21 SVQIGGLFPRGADQEYSAF----RIGMVQFGTAEFRLTPHIDNLEVANSFAITNCFCSQFSRGVY 81

  Fly   100 GVFGPSSRHTAVHLMSICDAMDIPHIY-SYMSENAEGFNLHPHPADLAKALYSLITEFNWTRFIF 163
            .:||...:.:...:.|.|:.:.:..|. |:.::....|.|...| |:...|.||:..:.|.:|.:
Zfish    82 AIFGFYDKKSVNTITSFCETLHVSFITPSFPADGLNQFVLQMRP-DIKGPLISLVEYYKWEKFAY 145

  Fly   164 LYESAEYLNILNELTTMLGKSGTVITVLRYDMQLNGN---------YKQVLRRVRKSVDNRIVVV 219
            ||:|...|:.|..:.....:....:|.:..     ||         |:.:.:.:....:.|:::.
Zfish   146 LYDSDRGLSTLQAVLDTAAERKWQVTAINV-----GNLKDEWKDEAYRSLFQDLENKNERRVILD 205

  Fly   220 GSSETMPEFLNQAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSEANITGLRLFS-PEKMAVK--- 280
            ...:.:.:.:.|...:|...:.|.|||.|..|...||.:.:|..||::|.::.. .:.:..|   
Zfish   206 CEQDKVKDIMEQVITIGRHVKGYHYIIANFGFVDGDLSKIQYGGANVSGFQIVDFDDPLVAKFDQ 270

  Fly   281 --ELLMKLGYPTDQDEFRNGSCPITVEMALTYDAVQLFAQTLKNL-------------------P 324
              |.|.:..||......|..|       ||||||||:..:..:.|                   |
Zfish   271 RWEALEEKEYPGADSRIRYTS-------ALTYDAVQVMTEAFRFLHKQRIDISRRGNNGDCLANP 328

  Fly   325 FKPMPQ--NCSQRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEGNVRK-GYHLDVIELQPSGI 386
            ..|..|  ...:..:.||.||                |||.|.|:...|: .|.::|:||:.||.
Zfish   329 AVPWAQGVEIERALKQVRVDG----------------LTGNIQFDQYGRRVNYTVNVMELKNSGP 377

  Fly   387 VKVGTWDEDRQYRPQRLAPTTAQ-FDSVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYE 450
            ||:|.|:|     ..::|.|.:. |.:....:.||| :|:.::...||..|.:..:....|.:||
Zfish   378 VKIGYWNE-----MDKMAVTKSDLFPNDTMGMENKT-VIVTTILEAPYVMLKKNAELFTDNERYE 436

  Fly   451 GYGVDLIKELADKLGFNFTF-VNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQ 514
            ||.|||..|:|...||.:.. :.....||:.:..|....||:.|::.|:||:|:..||||..||:
Zfish   437 GYCVDLAAEIAKHCGFKYQLRIVADGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREE 501

  Fly   515 ALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWD 579
            .:||:.|||:|||:|:..||||:.|.:|:|:||.:.|:|..:.|:::|||:..|::.|.||.||.
Zfish   502 VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWH 566

  Fly   580 NPYPCIEE-------PEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVV 637
            .     ||       |.|..|:|.:.||:||:.||.:|||.:|.|::||.|.|...|||||||::
Zfish   567 T-----EEFEDGQLGPSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIII 626

  Fly   638 SSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFM-SE 701
            ||||||||||||:|:..|.|.|.:|||...: :.||....|||:.||..|....:.||.::| |.
Zfish   627 SSYTANLAAFLTVERMVSPIESAEDLAKQTE-IAYGTLDAGSTKEFFRRSKIALFDKMWQYMKSA 690

  Fly   702 NPQYLTEDNMEGVNRV-KTNTHYAFLMESTSIEYNTKRE-CNLKKIGDALDEKGYGIAMRKDWPH 764
            .|....::.:|||.|| |:...||:|:|||..||..:|: |:..|:|..||.||||||..|....
Zfish   691 EPSVFVKNTVEGVLRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSAL 755

  Fly   765 RGKFNNALLELQEQGVLEKMKNKWW---NEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSC 826
            |...|.|:|:|.|||:|:|:|||||   .|.|:|...:||   ..:.|.::|:.|||::|:.|..
Zfish   756 RNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGESKE---KTSALSLSNVAGVFYILVGGLG 817

  Fly   827 CALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFVI 863
            .|:|..::.:......:|...::...||::.:.:..|
Zfish   818 LAMLVALVEFCYKSRAEAKRMKMTFTDAMRSKARLSI 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 89/394 (23%)
ANF_receptor 51..382 CDD:279440 79/371 (21%)
PBP2_iGluR_Kainate 419..790 CDD:270432 167/384 (43%)
Lig_chan 551..824 CDD:278489 125/285 (44%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 90/405 (22%)
ANF_receptor 51..373 CDD:279440 75/350 (21%)
PBP2_iGluR_AMPA 406..783 CDD:270433 167/383 (44%)
Lig_chan 538..816 CDD:278489 125/286 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591330
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.750

Return to query results.
Submit another query.