DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and Grik2

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_011241422.1 Gene:Grik2 / 14806 MGIID:95815 Length:943 Species:Mus musculus


Alignment Length:932 Identity:315/932 - (33%)
Similarity:487/932 - (52%) Gaps:114/932 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFFNHFVILWSLFSIHISVNWAQYENFGGYDNYQSLESVPIGLLTDQNTEQMNIVFDHAIDVANQ 65
            :|.....:|..|..|..|........|||...|  :||.|:|      .|:  :.|..|::..|:
Mouse    12 VFSRSIKVLLCLLWIGYSQGTTHVLRFGGIFEY--VESGPMG------AEE--LAFRFAVNTINR 66

  Fly    66 E----VGTSLTSLKEEVNYGDAYQSYGKLCRMLETGIAGVFGPSSRHTAVHLMSICDAMDIPHIY 126
            .    ..|:||...:::|..|::::..|.|..|..|:|.:||||...:|..:.|||:|:.:|||.
Mouse    67 NRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQ 131

  Fly   127 S----YMSENAEGF--NLHPHPADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSG 185
            :    .:|:|.:.|  :|:|..:.|::|:..|:..|.|.....:|:.:..|..|.||        
Mouse   132 TRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQEL-------- 188

  Fly   186 TVITVLRYDMQL--------NGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDY 242
             :....||:::|        ..:.|.:|:.:::..:..::...|.|.....|.||..:|::.|.|
Mouse   189 -IKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYY 252

  Fly   243 KYIIGNLDFHSFDLEEYKYSEANITGLRLFSPEKMAVKELLMK-----LGYPTDQDE-FRNGSCP 301
            .||...||..:.|:|.|:||..|:||.|:.:.|...|..::.|     |..|...|. ..:|.  
Mouse   253 HYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGF-- 315

  Fly   302 ITVEMALTYDAVQLFAQTLKNLPFKPMPQNCSQRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYF 366
            :|.:.||.||||.:.:..::..|...:......|.:..| .|:.|.:.::......  |||.|.|
Mouse   316 MTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWR-FGTRFMSLIKEAHWEG--LTGRITF 377

  Fly   367 E--GNVRKGYHLDVIELQPSGIVKVGTWD--------EDRQYRPQRLAPTTAQFDSVDNSLANKT 421
            .  ..:|..:.||||.|:..|:.|:||||        |.::.:|.          ::.:||:|::
Mouse   378 NKTNGLRTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPA----------NITDSLSNRS 432

  Fly   422 FIILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNF--TFVNGGNDYGSYNKST 484
             :|:.::..:||....::.|.|.||.::|||.:||::||:..|||.:  ..|..|. ||:.:...
Mouse   433 -LIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGK-YGAQDDVN 495

  Fly   485 NESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFS 549
            .:..||:||::..:||||:..|.||..||:.:||:.|||.|||:|||.||....|.:|:|::|.|
Mouse   496 GQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLS 560

  Fly   550 EEVWWFLGFSFLGVSLSFFILGR-----------------------------------LSPSEWD 579
            .::|.::..::||||...|::.|                                   .||.||.
Mouse   561 PDIWMYILLAYLGVSCVLFVIARQSKFSWFKYPNCSHYHHSQRCLCTQHLESYMELCLFSPYEWY 625

  Fly   580 NPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANL 644
            ||:||..:.:.:||.|||.||.||..|||:|||||:.|||||||.|...|||||||::|||||||
Mouse   626 NPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANL 690

  Fly   645 AAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQ-YLTE 708
            |||||:|:.:|.|:|.|||| .:..:.|||.:.|:|..||..|....|.||..|||...| .|.:
Mouse   691 AAFLTVERMESPIDSADDLA-KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVK 754

  Fly   709 DNMEGVNRVKTNTHYAFLMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALL 773
            .|.||:.||.| :.||||||||:||:.|:|.|||.:||..:|.||||:......|:|.|...|:|
Mouse   755 SNEEGIQRVLT-SDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAIL 818

  Fly   774 ELQEQGVLEKMKNKWWNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVL 838
            :|||:|.|..||.|||.  |.|  ..:|::.:|:.|.:.|:.|:|.||..|...::...:..::.
Mouse   819 QLQEEGKLHMMKEKWWR--GNG--CPEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLY 879

  Fly   839 FVMKKAHHYRVPLRDALKEEFQ 860
            ...|.|...:.....|:.||.:
Mouse   880 KSKKNAQLEKRSFCSAMVEELR 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 105/387 (27%)
ANF_receptor 51..382 CDD:279440 95/356 (27%)
PBP2_iGluR_Kainate 419..790 CDD:270432 178/408 (44%)
Lig_chan 551..824 CDD:278489 136/308 (44%)
Grik2XP_011241422.1 PBP1_iGluR_Kainate 37..414 CDD:380605 111/400 (28%)
Periplasmic_Binding_Protein_Type_2 430..835 CDD:389745 178/408 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846406
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3952
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.710

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