DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and grin3b

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_017952374.2 Gene:grin3b / 100497172 XenbaseID:XB-GENE-990106 Length:1005 Species:Xenopus tropicalis


Alignment Length:848 Identity:180/848 - (21%)
Similarity:334/848 - (39%) Gaps:137/848 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 LCRML-ETGIAGVFG-PSSRHTAVHLMSICDAMDIPHIYSYMSE------NAEGFNL----HPHP 142
            ||::| ..|||.|.. |.::...:.|..:...::||.|.....|      ....|:|    ....
 Frog    91 LCQVLVAQGIAAVLAFPQAQEELLQLEFLSSFLEIPFISILEQEQIVPLATKNPFHLQMDTQSSV 155

  Fly   143 ADLAKALYSLITEFNWTRFIFL----YESAEYLNILNELTTMLGKSGTVITVLRYDMQLNGNYKQ 203
            .:|....:|::...:|.....:    ::||.....|...||::  |.|::.:...|......:.|
 Frog   156 ENLMDIFFSVLQNSSWEEVDIITCHPWDSASIQRYLTSNTTLV--SRTILNIHPVDESALVPFLQ 218

  Fly   204 VLRRVRKSVDNRIVVVGSSETMPEFL-NQAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSEANIT 267
            ......|:....:::.|........: ..|:..|:...::.::||    |..:.||.. :|....
 Frog   219 QHFESMKNPQFPMLLYGCDARRSSLVFRVARDCGLEAHEFHWMIG----HPLNGEEMT-TEGMPP 278

  Fly   268 GLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCPITVEMALTYDAVQLFAQTLKNLPFKPMPQNC 332
            ||..:.           ::..||.:...|:.       :.|...|:........:|.......||
 Frog   279 GLLAYG-----------EVSRPTMEKFIRDA-------VGLVTRAISAAVHVRPDLALIQSMVNC 325

  Fly   333 S-QRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEGN-VRKGYHLDVIELQPSGI-----VKVG 390
            : ::|:.....||....::.....:.:  ||.||...| :...:|..:..|....:     |.||
 Frog   326 NDKQTKQNESSGSYLSRFLANTSFSGQ--TGQIYVSNNLIHTEHHYRIWSLVRDSLGDPTWVTVG 388

  Fly   391 TWDEDR--------QYRPQRLAPT---------------------TAQFDS----------VDNS 416
            .|.:.:        |.|.|:..|.                     |.:.|:          :|..
 Frog   389 GWRQGKMEVEEGLWQSRIQQWEPAPGGFARTKLRVVTLVEHPFVFTREVDADGSCPAGQMCLDPR 453

  Fly   417 LANKTFI-ILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNF-TFVNGGNDYGS 479
            ..|...: :|....|.|...:...||     :...||.:||:::|::.|.|:| .::.|...||:
 Frog   454 TNNSAVLDVLFEELNSPNGSVPLEYK-----TCCYGYCIDLLEKLSEDLRFDFELYIVGDGKYGA 513

  Fly   480 YNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTF 544
              :..:..||::.::::|.|.:|:|..:|.|.|...:|||.||.:..:.||......|:| :..|
 Frog   514 --RKGDRWTGLVGDLLSGAAHMAVTSFSINSARSTVIDFTSPFYSTSLGILVRMRDTASP-IGAF 575

  Fly   545 MDPFSEEVW--WFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGA 607
            |.|....:|  .|:......:.|:|:        ||.:|:............|:..:::......
 Frog   576 MWPLHWSMWVGIFVALHITALFLTFY--------EWKSPFGMTPHGRNRTKIFSYSSALNLCYAI 632

  Fly   608 LL-QQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDD--LADNKDG 669
            |. :..|...||..:.|.:.:.|..|.|:|:|||||||||.:..:|....::.:.|  |.....|
 Frog   633 LFGRTVSSKTPKCCTGRVLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEALSGIHDPKLHHPSQG 697

  Fly   670 VVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTN--THYAFLMESTSI 732
            ..:|.....|...:...|..|.:..|.||.       .....:||:.:||:  |..||:|:...:
 Frog   698 FRFGTVWESSAEQYIKKSFPEMHNYMRKFS-------VPATSDGVHLLKTDPPTLNAFIMDKALL 755

  Fly   733 EYNTK--RECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEV--G 793
            :|...  .:|.|..||.....:||||.:.::.|.....:..:...:..|.::.:.:||:..|  |
 Frog   756 DYEVSIDSDCKLLTIGKPFAIEGYGIGLPQNSPLTSNISEFISRYKSSGFMDTLHDKWYKMVPCG 820

  Fly   794 TGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEE 858
            ..:.|..|    ...:.:.:..|:|.:|.:|.|.:||..::..|::      |..:| |...:..
 Frog   821 KRVYAVTE----TLQMGIYHFSGLFVLLCIGFCGSLLTSLMERVVY------HLILP-RIRRRRR 874

  Fly   859 FQF 861
            |::
 Frog   875 FKY 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 61/329 (19%)
ANF_receptor 51..382 CDD:279440 56/310 (18%)
PBP2_iGluR_Kainate 419..790 CDD:270432 96/381 (25%)
Lig_chan 551..824 CDD:278489 65/283 (23%)
grin3bXP_017952374.2 PBP1_iGluR_NMDA_NR3 29..402 CDD:380600 61/337 (18%)
PBP2_iGluR_NMDA_Nr3 418..814 CDD:270438 98/418 (23%)
Lig_chan 582..848 CDD:395014 65/284 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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