DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and LOC100334689

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_017206939.1 Gene:LOC100334689 / 100334689 -ID:- Length:991 Species:Danio rerio


Alignment Length:880 Identity:291/880 - (33%)
Similarity:469/880 - (53%) Gaps:75/880 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ILWSLFSIHISVNWAQYENFGGYDNYQSLESVPIGLLTDQNTEQMNIVFDHAIDVANQE----VG 68
            |:..||.|..|.........||.  ::..:. |:.|::.:     .:.|..|::..|:.    ..
Zfish    14 IIVVLFWIQSSFGMPHVIRIGGI--FEQTDG-PVALVSSE-----ELAFKFAVNNINRNRTLLPN 70

  Fly    69 TSLTSLKEEVNYGDAYQSYGKLCRMLETGIAGVFGPSSRHTAVHLMSICDAMDIPHIY----SYM 129
            |:||...:.:|..|::::..|.|..|..|:..:||||...::..:.|||:|:::|||.    .:.
Zfish    71 TTLTYDIQRINIYDSFEASRKACDQLSLGVVAIFGPSHSSSSNAVQSICNALEVPHIQVRWKHHP 135

  Fly   130 SENAEGF--NLHPHPADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSGTVITVLR 192
            .:|.:.|  ||:|..:.|:.|:..|:....|.....:|:.:..|..|.||         ::...|
Zfish   136 MDNRDTFYANLYPDYSSLSYAILDLVQFLKWKTATVVYDDSTGLIRLQEL---------IMAPSR 191

  Fly   193 YDMQL--------NGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNL 249
            |:::|        ..:.:.:|:.:::|.:.||:...|.....:.|.|||.:|::.|.|.||...|
Zfish   192 YNIRLKIRQLPMDTVDTRPLLKEMKRSREFRIIFDCSHTMAAQILKQAQMMGMMTEYYHYIFTTL 256

  Fly   250 DFHSFDLEEYKYSEANITGLRLFSPEKMAVKELLMKLGY-----PTDQDEFRNGSCPITVEMALT 309
            |..:.:||.|::...|:||.|:.:.:...|..::.|...     |........|.  :|.:.|||
Zfish   257 DLMAINLEPYRFCGVNMTGFRILNVDNPQVASIVEKWSLERQIPPKPDSGLLEGI--MTTDAALT 319

  Fly   310 YDAVQLFAQTLKNLPFKPMPQNCSQ--RTESVRDDGSSFKNYMRTLRLTDRLLTGPIYFE--GNV 370
            ||||.:.:.:.::.|  .|..|..|  |.:..| .|..|.::::......  |||.:.|.  ..:
Zfish   320 YDAVHIVSVSYQHAP--QMTVNSLQCHRHKPWR-FGGRFMSFIKESHWDG--LTGRLCFNRTTGL 379

  Fly   371 RKGYHLDVIELQPSGIVKVGTWDEDRQYRPQRLAPTTAQFDSVDNSLANKTFIILLSVPNKPYAQ 435
            |..:.||::.|:..|:.|||.|..........:......  ::.:||:|:: :::.::..:||..
Zfish   380 RTDFDLDIVSLKEDGLQKVGKWSASGGLNITEVPRQNGM--NITDSLSNRS-LVITTILEEPYVM 441

  Fly   436 LVETYKQLEGNSQYEGYGVDLIKELADKLGFNFT--FVNGG-----NDYGSYNKSTNESTGMLRE 493
            |.::.|.|.||.::||:.:||:||||..|||::.  .|..|     :|.|.:|       ||:||
Zfish   442 LKKSDKALVGNDRFEGFCIDLLKELASILGFSYEIHLVPDGKYGFQDDKGQWN-------GMIRE 499

  Fly   494 IMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGF 558
            :|..|||||:..||||..||:|:||:.||:|.||:|||.||.......|:|::|.:.::|.::..
Zfish   500 LMEHRADLAVAPLTITFMREKAIDFSKPFLNTGISILYRKPNSTNSGFFSFLNPMTPDIWVYILL 564

  Fly   559 SFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTR 623
            ::||||...|::.|.||.||.:.:||....:.:||.|||.||.||..|:|:|||||:.|||||||
Zfish   565 AYLGVSCVLFVIARFSPYEWYDAHPCNPGSDVVENNFTLLNSFWFGVGSLMQQGSELMPKALSTR 629

  Fly   624 TVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSA 688
            .:...|||||||::||||||||||||:|:..|.::|.|||| .:..:.||..|.|:|.:||..|.
Zfish   630 IIGGIWWFFTLIIISSYTANLAAFLTVERMDSPVDSADDLA-KQTKIEYGVVKDGATMSFFKKSR 693

  Fly   689 EERYKKMNKFMSENPQYLTEDNME-GVNRVKTNTHYAFLMESTSIEYNTKRECNLKKIGDALDEK 752
            ...::||..|||.........::| |:.|| ..:.||.|||||:|||.|:|.|||.::|..:|.|
Zfish   694 VSTFEKMWAFMSSRQSTSFVKSIEDGIQRV-LKSDYALLMESTTIEYVTRRNCNLTQVGGIIDSK 757

  Fly   753 GYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKEDAPDATPLDMNNLEGV 817
            ||||...|..|:|.|...|:|.:.|.|.|..:|.|||    :|....:::..:..|:.:.||.|:
Zfish   758 GYGIGTPKGSPYRDKITIAILGILEDGRLHMLKEKWW----SGSSCLEDERYETGPMGIQNLGGI 818

  Fly   818 FFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLR 852
            |.||..|...::...|..::..:.|.|...:|.|:
Zfish   819 FIVLASGLVLSVFVAIGEFIYKLRKTAEREQVFLQ 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 97/380 (26%)
ANF_receptor 51..382 CDD:279440 90/357 (25%)
PBP2_iGluR_Kainate 419..790 CDD:270432 169/378 (45%)
Lig_chan 551..824 CDD:278489 122/273 (45%)
LOC100334689XP_017206939.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591307
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.660

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