DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and grin3bb

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:972 Identity:199/972 - (20%)
Similarity:355/972 - (36%) Gaps:249/972 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 SLTSLKEEVNYGDAYQSYGKLCR-MLETGIAGVFG-PSSRHTAVHLMSICDAMDIPHIYSYMSEN 132
            ||..:..|...||....:..:|: ::..|::.|.. |.::...|.:..:...::||         
Zfish    85 SLDVVAREAQSGDPESLFRCVCQDIVVQGVSAVLAFPQTQEEIVQMEFMSSFLEIP--------- 140

  Fly   133 AEGFNLHPHPADLAKALYSLITEFNWTRFIFLYESAEYLNILN----ELTTMLGKSGTVITVLRY 193
                                        ||.:.|..|.|...|    ::||.:..||.|..:|  
Zfish   141 ----------------------------FISIIEHGEPLKTQNRFHLQMTTRIPPSGLVELLL-- 175

  Fly   194 DMQLNGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDF------- 251
                     .||:|           .|..|:|....:..:..|::  |...:.|...:       
Zfish   176 ---------AVLQR-----------SGWEESMAVLCHGWEDAGLL--DLLKLQGRFGWGPSQWHL 218

  Fly   252 -------HS---------FDLEEYKYSEANITGLRLFSPEKMAVKELLMK--------------L 286
                   ||         |..|.:....:....:.||..:......:|..              :
Zfish   219 RAALNLSHSTARMANISDFLSEHFNLDHSPPASVLLFGADPECASSVLRSAHDLGLTLPTVHWIM 283

  Fly   287 GYPTDQDEFRNGSCPITVEMALTY-------------DAVQLFAQTL-------KNLPFKPMPQN 331
            |:|...|...:...|:.:   |.|             ||:||..:.:       .:|.......|
Zfish   284 GHPLSPDALHSIGLPLGL---LAYGEVDHKPLDFYISDALQLINRAVTAATVVRPDLALIQNMVN 345

  Fly   332 CSQRTESVRDDGSSFKNYMRTLRLTDRL-LTGPIYFEGN---VRKGYHLDVIELQPSGI-----V 387
            |..:... .:..||.:...|.|..|..: ||||:..:.|   |...:.:.:..|:...:     |
Zfish   346 CFDKPNK-HELPSSGQYIARFLSNTSFVGLTGPVIVQRNLSRVHTSHKVHIWSLRRDAVGQPTWV 409

  Fly   388 KVGTWD---------------------------EDRQYRP------QRLAPTTAQFDSVDNSLAN 419
            .||:|:                           |.|::|.      .||...|         |..
Zfish   410 TVGSWEGGRLNVEEQGLWQ
GSSPRQRTEGQMGREGRRWRAGFPVSGSRLRVVT---------LVE 465

  Fly   420 KTFIILLSVP---NKPYAQLV--------ETYKQL-----EGNSQY---------EGYGVDLIKE 459
            ..|:....|.   |.|..|..        ||...|     :||..:         .||.:||:::
Zfish   466 HPFVFTREVDEDGNCPAGQYCLDAGTNSSETLDHLYAERAQGNKSFLPPDYSKCCYGYCIDLLEK 530

  Fly   460 LADKLGFNF-TFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFM 523
            |::.:.|.| .::.|...||:.  ...:.||::.::::|.||:|:|..:|.|.|.:.:|||.||.
Zfish   531 LSEDMNFEFDLYIVGDGKYGAV--KGGQWTGLVGDLLSGVADMAVTSFSINSARSKVIDFTSPFF 593

  Fly   524 NLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGR-LSPSEWDNPYPCIEE 587
            :..:.||......|.| :..||.|....:|       :|:.::..|... |:..||.:|:.....
Zfish   594 STSLGILVRSKDTAAP-IGAFMWPLHWSMW-------MGIFVALHITALFLTLYEWKSPFGMTPH 650

  Fly   588 PEELENQFTLGNSIWFTTGALL-QQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIE 651
            .......|:..:::......|. :..|...||..:.|.:.:.|..|.|:|:|||||||||.:..|
Zfish   651 GRNRVKVFSYSSALNLCYAILFGRTVSSKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMVGE 715

  Fly   652 KPQSLINSVDD--LADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQYLTEDNMEGV 714
            |....::.:.|  |.....|..:|..:..|..::...|..|.::.|.||....    |.|   ||
Zfish   716 KTFEEVSGIHDAKLHHPSQGFRFGTVRESSAEDYMKKSFPEMHEYMRKFNEPT----TPD---GV 773

  Fly   715 NRVKTNTHY--AFLMESTSIEYNTK--RECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLEL 775
            ..:||:...  ||:|:...::|...  .:|.|..:|.....:||||.:.::.|.....:..:...
Zfish   774 ATLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNISEFVSRY 838

  Fly   776 QEQGVLEKMKNKWWNEV--GTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVL 838
            :..|.::.:.:||:..|  |..:.|..|    ...:.:.:..|:|.:|.||         ::..|
Zfish   839 KSDGYMDMLHDKWYKVVPCGKRVFAVTE----TLQMGIRHFSGLFVLLCVG---------VTGAL 890

  Fly   839 FVMKKAH-HYRVPL-RDALKEEFQFVIDFNNYV-RVLKNSASIYSRSRQSSMSVASVAQESQ 897
            ..:...| .||:.| ....|::|::.:..:..: |.|..:.....|.|.::....:: |::|
Zfish   891 LTLAGEHAFYRLVLPHIRRKQKFKYWLHTSQKIHRALNMTYEDVKRQRANTEKSCNI-QKAQ 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 70/424 (17%)
ANF_receptor 51..382 CDD:279440 64/378 (17%)
PBP2_iGluR_Kainate 419..790 CDD:270432 101/404 (25%)
Lig_chan 551..824 CDD:278489 66/282 (23%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 69/407 (17%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 104/420 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591316
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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