DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and LOC100331381

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_017207884.1 Gene:LOC100331381 / 100331381 -ID:- Length:1063 Species:Danio rerio


Alignment Length:842 Identity:292/842 - (34%)
Similarity:434/842 - (51%) Gaps:71/842 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 EVNYGDAYQSYGKLCRMLETGIAGVFGPSSRHTAVHLMS-ICDAMDIPHIYSYMSENAE------ 134
            |:.....|::...:|::|..|:..|.||:|...:...:| ||...:||||.....|...      
Zfish    81 ELQRDSQYETTDTMCQILPKGVVSVIGPASSPASGSTVSHICGEKEIPHIKIGPEETPRLPYLRF 145

  Fly   135 -GFNLHPHPADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSGTVITVLRYDMQLN 198
             ...|:|...||:.|:.:::..|.:.....:...||.|..|.||......|...::|...|..|:
Zfish   146 ASVTLYPSNEDLSLAIGAILRSFGYPTASLICAKAECLLRLEELVRHFLISRETLSVRMLDENLD 210

  Fly   199 GNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSE 263
            ..  .:|:.:|......|::..::......|.:|.::|:.:..||||:..:||....|::....:
Zfish   211 PT--PLLKEIRDDKVATIIIDANASVSILILKKASELGMTSAFYKYILTTMDFPLLRLDDVVNDQ 273

  Fly   264 ANITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCPIT------VEMALTYDAVQLFAQTLKN 322
            :||.|..:.:.......|.:..|..     .:|.| |.::      :..||.:|||.:....::.
Zfish   274 SNIVGFSMLNNSHPFYLEFIRSLNL-----SWREG-CDLSPYPGPALSSALMFDAVHVVVGAVRE 332

  Fly   323 L------PFKPMPQNCSQRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEG-NVRKGYHLDVIE 380
            |      ..||:  :|:  :..:...|:|..||:|.:....  |||.:.|.. ..|..|.|.::|
Zfish   333 LNRSQEIGVKPL--SCT--SSLIWQHGTSLMNYLRMVEYDG--LTGRVEFNSKGQRTNYTLRILE 391

  Fly   381 LQPSGIVKVGTWDEDRQYRPQRLAPTTAQFD-SVDNSLANKTFIILLSVPNKPYAQLVETYKQLE 444
            ....|..::|.|     |....||..:...| :...:|||||..:...:.| ||....|.|:..:
Zfish   392 KFKGGHKEIGVW-----YSNNTLAMNSTSLDINTSETLANKTLTVTTILEN-PYVMRKENYQDFQ 450

  Fly   445 GNSQYEGYGVDLIKELADKLGFNF--TFVNGGNDYGSYNKSTNES-TGMLREIMTGRADLAITDL 506
            |:.||||:.||:::||||.|.|:|  ..|:.|. ||:  ...|.| |||:.|::..:||||:...
Zfish   451 GSDQYEGFCVDMLRELADILKFSFRIKLVDDGL-YGA--PEPNGSWTGMVGELINRKADLAVAGF 512

  Fly   507 TITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILG 571
            |||||||:.:||:.|||||||:|||.......|..|:|:||||..||.|:..::|.||...|:..
Zfish   513 TITSEREKVIDFSKPFMNLGISILYRVHIGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAA 577

  Fly   572 RLSPSEWDNPYPCIEEPEE-LENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLI 635
            ||||.||.||:||..|..: ||||:|||||:||..|..:||||||.|:|||||.|:..||.||||
Zfish   578 RLSPYEWYNPFPCWRERRDLLENQYTLGNSLWFPIGGFMQQGSEIMPRALSTRCVSGVWWAFTLI 642

  Fly   636 VVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKFM- 699
            ::||||||||||||:::.:..|.|.:|||| :..:.||..:.|||..|||.|..:.|::|..:| 
Zfish   643 IISSYTANLAAFLTVQRMEVPIESAEDLAD-QTNIQYGTIQGGSTMTFFMNSRYQTYQRMWNYMY 706

  Fly   700 SENPQYLTEDNMEGVNRVKTNTHYAFLMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPH 764
            |:.|....:...||:.|| .|:.||||:|||..||:.:..|||.:||..||.|||||.|....|.
Zfish   707 SKQPSVFVKSTEEGIARV-LNSKYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPF 770

  Fly   765 RGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCAL 829
            |.:....:|:|||...||.:|.:||.   .|.|..:|| ..|..|.|:|:.|:|.||:.|...|:
Zfish   771 RDEITLGILQLQENNRLEILKRRWWE---GGKCLKEED-HRAKGLGMDNIGGIFVVLICGLIIAV 831

  Fly   830 LYGIISWVLFVMKKA---------------HHYRVPLRDALKEEFQFVIDFNNYVRVLKNSA 876
            ...|:.:|....:.|               .|.||.:...:..||:.||......|:.:..|
Zfish   832 FVAIMEFVWSTRRSAETDEVRPHPCPVRNHRHARVSVCQEMMTEFRNVISCKKNSRLRRRRA 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 79/339 (23%)
ANF_receptor 51..382 CDD:279440 76/325 (23%)
PBP2_iGluR_Kainate 419..790 CDD:270432 180/375 (48%)
Lig_chan 551..824 CDD:278489 131/274 (48%)
LOC100331381XP_017207884.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.